From d3c3f88a8a76604dda94ffea164f6f53b016ec3a Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 28 Nov 2012 22:57:23 +0000 Subject: [PATCH] Edited wiki page rio through web user interface. --- wiki/rio.wiki | 10 ++++++---- 1 file changed, 6 insertions(+), 4 deletions(-) diff --git a/wiki/rio.wiki b/wiki/rio.wiki index ac4db98..696bff1 100644 --- a/wiki/rio.wiki +++ b/wiki/rio.wiki @@ -1,6 +1,6 @@ -#summary generalized speciation duplication inference +#summary resampled inference of orthologs -= Generalized Speciation Duplication Inference = += RIO: Resampled Inference of Orthologs = == Purpose == @@ -9,7 +9,7 @@ To infer duplication events on a gene tree given a trusted species tree. == Usage == {{{ java -Xmx1024m -cp -path/to/forester.jar org.forester.application.gsdi [-options] +path/to/forester.jar org.forester.application.rio [-options] }}} === Options === @@ -53,7 +53,9 @@ GSDI can establish a taxonomic mapping between gene and species tree on the foll * [http://forester.googlecode.com/files/wnt_gsdi_log.txt log file (output)] -== Reference == +== References == + +Zmasek CM and Eddy SR "RIO: Analyzing proteomes by automated phylogenomics using resampled inference of orthologs" [http://www.biomedcentral.com/1471-2105/3/14/ BMC Bioinformatics 2002, 3:14] Zmasek CM and Eddy SR "A simple algorithm to infer gene duplication and speciation events on a gene tree" [http://bioinformatics.oxfordjournals.org/content/17/9/821.abstract Bioinformatics, 17, 821-828] -- 1.7.10.2