From d3dd5e71a79f3841f0e70bca7934a9ebf443aca7 Mon Sep 17 00:00:00 2001 From: jprocter Date: Tue, 28 Nov 2006 11:32:49 +0000 Subject: [PATCH] 2.2 documentation --- help/html/features/hiddenRegions.html | 23 ++++++++++++++++------- help/html/features/newkeystrokes.html | 13 +++++++++++-- 2 files changed, 27 insertions(+), 9 deletions(-) diff --git a/help/html/features/hiddenRegions.html b/help/html/features/hiddenRegions.html index 3f7b599..b119b91 100644 --- a/help/html/features/hiddenRegions.html +++ b/help/html/features/hiddenRegions.html @@ -23,13 +23,22 @@ performed on the visible group representative will be propogated to all the sequences in that group.
The hidden representative sequences will not be used in any calculations or web service alignments (nb. this may change in the future). -
-
Warning:hidden -representative sequence groups are only partly implemented in the -jalview 2.2 release. When a hidden representative group is created in -one alignment view, it will be propagated to all other views. Similarly, -revealing the represented sequences in one view will reveal them in all -other views. This will be resolved in a future Jalview release.
+

Hidden Sequence Representatives and +Multiple Views
+A word of warning: hidden representative sequence groups are +only partly implemented in the jalview 2.2 release, and the following +issues will be resolved in the future.
+Currently, represented hidden groups are only made correctly if there is +just one alignment view. When multiple views on an alignment exist, then +the represented group will be displayed correctly in the view in which +it was made, but in other views, both representative and hidden +sequences will be visible, but will behave as if they are grouped.
+Hidden representatives are propagated correctly to a new view if they +exist in the current view. However, if the represented sequences are +revealed in any one view, then in all other views they will simply be +marked as hidden, and their association with the representative sequence +will be lost.
+

Hiding Columns
To hide selected columns in an alignment, use the "View diff --git a/help/html/features/newkeystrokes.html b/help/html/features/newkeystrokes.html index 8fd671e..12ea967 100644 --- a/help/html/features/newkeystrokes.html +++ b/help/html/features/newkeystrokes.html @@ -8,16 +8,25 @@ alignment even easier. The selection commands in the Edit menu, and the alignment formatting controls within the View menu have also been moved into their own respective Select and Format menus.

-

Some of the most important new keystrokes are shown below : +

Some of the more important new keystrokes are shown below :

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