From d413f63bb1230b0aba2341111fe847df495807bd Mon Sep 17 00:00:00 2001 From: cmzmasek Date: Sat, 11 May 2013 21:21:29 +0000 Subject: [PATCH] more genomes! --- forester/data/tol_147.xml | 6822 +++++++++++++++++++++++++++++++++++++++++++++ 1 file changed, 6822 insertions(+) create mode 100644 forester/data/tol_147.xml diff --git a/forester/data/tol_147.xml b/forester/data/tol_147.xml new file mode 100644 index 0000000..33b0175 --- /dev/null +++ b/forester/data/tol_147.xml @@ -0,0 +1,6822 @@ + + + + + cellular organisms + + + Neomura + + + + 2759 + Eukaryota + superkingdom + + + Unikonta + + Opisthokonta & Apusozoa + + + 33154 + Opisthokonta + Fungi/Metazoa group + + + + Holozoa + + + Choanoflagellatea & Metazoa + + + 33208 + Metazoa + kingdom + + + Eumetazoa + + + + Bilateria & Cnidaria + + Bilateria + + Deuterostomia + + + + + 7711 + Chordata + phylum + + + Urochordata & Vertebrata + + + 7742 + Vertebrata + + + + 7776 + Gnathostomata + jawed vertebrates + superclass + + + + 117571 + Euteleostomi + + + Tetrapoda + + Amniota + + + 40674 + Mammalia + class + + + Theria + + + 9347 + Eutheria + Placental mammals + + + The new framework for understanding placental mammal evolution + + + + Boreoeutheria + Boreotheria + + + + 314146 + Euarchontoglires + superorder + + + + Euarchonta + + + + 9443 + Primates + order + + + + 376913 + Haplorrhini + suborder + + + + 314293 + Simiiformes + infraorder + + + + 9526 + Catarrhini + + + + 314295 + Hominoidea + Apes + superfamily + + + + 9604 + Hominidae + Great apes + family + + + + 207598 + Homininae + subfamily + + + + Hominini + tribe + + + + 9606 + HUMAN + Homo sapiens + Human + species + http://www.thehindu.com/multimedia/dynamic/00029/IN05_DARWIN_29896f.jpg + + + + + 9598 + PANTR + Pan troglodytes + Chimpanzee + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/8b/Schimpanse_zoo-leipig.jpg/800px-Schimpanse_zoo-leipig.jpg + + + + + + 9595 + GORGO + Gorilla gorilla gorilla + Western lowland gorilla + subspecies + 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analysis of six nuclear genes from all major rodent clades. + + + + Mouse-related clade + + + + 337687 + Muroidea + + + + 39107 + Murinae + subfamily + + + + 10090 + MOUSE + Mus musculus + Mouse + species + http://www.nsrl.ttu.edu/tmot1/images/mus_musc.jpg + + + + + 10116 + RAT + Rattus norvegicus + Rat + species + http://upload.wikimedia.org/wikipedia/commons/0/01/Rattus_norvegicus_1.jpg + + + + + + 10036 + MESAU + Mesocricetus auratus + Golden hamster + species + http://www.dicts.info/img/ud/syrian_hamster.jpg + + + + + + 10020 + DIPOR + Dipodomys ordii + Ord's kangaroo rat + species + http://www.nsrl.ttu.edu/tmot1/images/dipoordi.jpg + + + + + + 10141 + CAVPO + Cavia porcellus + Guinea pig + species + http://archive.vetknowledge.com/files/images/guinea-pig---tan.jpg + + + + + + 43179 + SPETR + Spermophilus tridecemlineatus + Thirteen-lined ground squirrel + Ictidomys tridecemlineatus + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/ADW_mammals/Rodentia/Spermophilus4345.jpg/medium.jpg + + + + + + 9975 + Lagomorpha + Rabbits, hares, pikas + order + + + + 9978 + OCHPR + Ochotona princeps + Southern American pika + species + http://upload.wikimedia.org/wikipedia/commons/3/3b/Ochotona_princeps.jpg + + + + + 9986 + RABIT + Oryctolagus cuniculus + Rabbit + species + http://greennature.com/gallery/farm-animal-pictures/albino_rabbit.jpg + + + + + + + + 314145 + Laurasiatheria + superorder + + + + Scrotifera + + + Perissodactyla & Cetartiodactyla & Chiroptera + + Perissodactyla & Cetartiodactyla + + + 91561 + Cetartiodactyla + Even-toed ungulates + + + Cetruminantia & Suina + + + Cetruminantia + + + + 9895 + Bovidae + family + + + + 9913 + BOVIN + Bos taurus + Bovine + Bos bovis + species + http://www.biopix.eu/photos/jcs-bos-taurus-(dansk-rodbroget-kvaeg)-22141.jpg + + + + + 9940 + SHEEP + Ovis aries + Sheep + species + http://animaldiversity.ummz.umich.edu/site/resources/james_dowlinghealey/blacksheep.jpg/medium.jpg + + + + + + 9721 + Cetacea + Whales + order + + + + 9771 + BALMU + Balaenoptera musculus + Blue whale + species + http://2.bp.blogspot.com/_W90V87w3sr8/TT63uRT_U9I/AAAAAAAAAo8/to9O8zEeo7k/s1600/bluewhale.jpg + + + + + 9739 + TURTR + Tursiops truncatus + Atlantic bottle-nosed dolphin + Delphinus truncatus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/a/a6/Bottlenose_Dolphin_KSC04pd0178.jpg/800px-Bottlenose_Dolphin_KSC04pd0178.jpg + + + + + + + 9823 + PIG + Sus scrofa + Pig + species + http://www.batraciens-reptiles.com/sus%20scrofa2.jpg + + + + + + 30538 + LAMPA + Lama guanicoe pacos + Alpaca + Lama pacos + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0658.jpeg + + + + + + 9796 + HORSE + Equus caballus + Horse + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0801/0088.jpeg + + + + + + 9397 + Chiroptera + Bats + order + + + + 59463 + MYOLU + Myotis lucifugus + Little brown bat + species + http://biology.lakeheadu.ca/uploads/Nature_photography/brown_bat.jpg + + + + + 132908 + PTEVA + Pteropus vampyrus + Large flying fox + species + http://upload.wikimedia.org/wikipedia/commons/thumb/5/5e/Pteropus_vampyrus1.jpg/412px-Pteropus_vampyrus1.jpg + + + + + + Carnivora + + 33554 + Carnivora + order + + + + 379584 + Caniformia + suborder + + + + 9646 + AILME + Ailuropoda melanoleuca + Giant panda + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3c/Giant_Panda_2004-03-2.jpg/800px-Giant_Panda_2004-03-2.jpg + + + + CANFA + + 9615 + CANFA + Canis familiaris + Dog + Canis lupus familiaris + subspecies + http://upload.wikimedia.org/wikipedia/commons/a/ab/Wikilabrador_jardin.JPG + + + + + FELCA + + 9685 + FELCA + Felis catus + Cat + Felis silvestris catus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/9/9b/Domestic_cat_cropped.jpg/755px-Domestic_cat_cropped.jpg + + + + + + + 9362 + Insectivora + hedgehogs, shrews, moles and others + order + + + + 9365 + ERIEU + Erinaceus europaeus + Western European hedgehog + species + http://upload.wikimedia.org/wikipedia/commons/d/d4/Igel01.jpg + + + + + 42254 + SORAR + Sorex araneus + Eurasian common shrew + European shrew + species + http://www.batraciens-reptiles.com/musaraigne2.jpg + + + + + + + + Atlantogenata + + + + 311790 + Afrotheria + superorder + + + + Paenungulata + + + + 9785 + LOXAF + Loxodonta africana + African savanna elephant + species + http://animaldiversity.ummz.umich.edu/site/resources/susan_hoffman/elephants.jpg + + + + + 9813 + PROCA + Procavia capensis + Cape hyrax + Rock dassie + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/1206/0460.jpeg + + + + + + 9371 + ECHTE + Echinops telfairi + Lesser hedgehog tenrec + species + http://animaldiversity.ummz.umich.edu/site/resources/david_kupitz/etelfairi.jpg + + + + + + 9348 + Xenarthra + Edentata + superorder + + + + 9358 + CHOHO + Choloepus hoffmanni + Hoffmann's two-fingered sloth + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/89/Sloth8.jpg/800px-Sloth8.jpg + + + + + 9361 + DASNO + Dasypus novemcinctus + Nine-banded armadillo + species + http://anthropometaphors.files.wordpress.com/2008/11/nine-banded-armadillo41.jpg + + + + + + + + 9263 + Metatheria + Marsupials + + + First combined cladistic analysis of marsupial mammal interrelationships + + + + + + Eometatheria + + + + 9315 + MACEU + Macropus eugenii + Tammar wallaby + species + http://upload.wikimedia.org/wikipedia/commons/d/de/Macropus_eugenii.jpg + + + + + 9305 + SARHA + Sarcophilus harrisii + Tasmanian devil + Sarcophilus laniarius + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/3b/Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg/727px-Sarcophilus_harrisii_-Healesville_Sanctuary-8a.jpg + + + + + MONDO + + 13616 + MONDO + Monodelphis domestica + Short-tailed gray opossum + species + http://animaldiversity.ummz.umich.edu/site/resources/phil_myers/classic/monodelphis.jpg/medium.jpg + + + + + + ORNAN + + 9258 + ORNAN + Ornithorhynchus anatinus + Duckbill platypus + species + http://upload.wikimedia.org/wikipedia/commons/1/12/Platypus_BrokenRiver_QLD_Australia2.png + + + + + Diapsida + + Neognathae + + 8825 + Neognathae + superorder + + + Phasianidae & Anatidae (waterfowl) + + + 9005 + Phasianidae + family + + + CHICK + + 9031 + CHICK + Gallus gallus + Chicken + Gallus domesticus + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f8/Rooster04_adjusted.jpg/800px-Rooster04_adjusted.jpg + + + + + 9103 + MELGA + Meleagris gallopavo + Common turkey + species + http://calphotos.berkeley.edu/imgs/512x768/0000_0000/0205/0858.jpeg + + + + + + 8839 + ANAPL + Anas platyrhynchos + Domestic duck + Anas boschas + species + http://content.ornith.cornell.edu/UEWebApp/images/MPR_070302_100009_L.jpg + + + + + TAEGU + + 59729 + TAEGU + Taeniopygia guttata + Zebra finch + Poephila guttata + species + http://upload.wikimedia.org/wikipedia/commons/thumb/8/84/Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg/355px-Taeniopygia_guttata_-_front_view_-_dundee_wildlife_park.jpg + + + + + ANOCA + + 795869 + ANOCA + Anolis carolinensis + Voigt, 1832 + Green anole + American chameleon + species + http://content61.eol.org/content/2009/09/20/01/05528_580_360.jpg + http://content61.eol.org/content/2008/10/08/13/66818_580_360.jpg + + + + + + + 8353 + Xenopus + genus + + + XENTR + + 8364 + XENTR + Xenopus tropicalis + Western clawed frog + Silurana tropicalis + species + http://genoweb.univ-rennes1.fr/OGP/xenopus%20tropicalis.jpg + + + + + 8355 + XENLA + Xenopus laevis + Daudin, 1802 + African clawed frog + Bufo laevis + species + http://upload.wikimedia.org/wikipedia/commons/e/e3/Xenopus_laevis.jpg + + + + + + Teleostei + + 32443 + Teleostei + + + + 123368 + Acanthomorpha + + + + 32485 + Percomorpha + + + Smegmamorpha + + GASAC + + 69293 + GASAC + Gasterosteus aculeatus + Three-spined stickleback + species + http://www.fiskbasen.se/images/gasterosteus_aculeatus.jpg + + + + ORYLA + + 8090 + ORYLA + Oryzias latipes + Medaka fish + Japanese ricefish + species + http://upload.wikimedia.org/wikipedia/commons/4/49/Nihonmedaka.jpg + + + + + + 31031 + Tetraodontidae + puffers + family + + + FUGRU + + 31033 + FUGRU + Takifugu rubripes + Japanese pufferfish + Fugu rubripes + species + http://upload.wikimedia.org/wikipedia/commons/thumb/2/25/Fugu_in_Tank.jpg/800px-Fugu_in_Tank.jpg + + + + TETNG + + 99883 + TETNG + Tetraodon nigroviridis + Green puffer + Chelonodon nigroviridis + species + http://upload.wikimedia.org/wikipedia/commons/thumb/b/b6/Tetraodon_nigroviridis_1.jpg/800px-Tetraodon_nigroviridis_1.jpg + + + + + + 8128 + ORENI + Tilapia nilotica + Linnaeus, 1758 + Nile tilapia + Tilapia nilotica + species + http://www.jjphoto.dk/fish_archive/warm_freshwater/oreochromis_niloticus_niloticus.jpg + + + + + + 8049 + GADMO + Gadus morhua + Atlantic cod + species + http://www.marinbi.com/g-morhua.jpg + + + + + DANRE + + 7955 + DANRE + Danio rerio + Zebrafish + Brachydanio rerio + species + http://fishbase.org.cn/images/species/Darer_m0.jpg + + + + + + + 7868 + CALMI + Callorhynchus milii + Australian ghost shark + Australian ghost shark + species + http://www.tudiscovery.com/tiburones/que_es/popup_que/asset/07914907646434433_elephant_shark_380x290.jpg + + + + + + 7757 + PETMA + Petromyzon marinus + Sea lamprey + species + http://www.uk-fish.info/pics/sealampray01.jpg + + + + + Urochordata + + 7712 + Urochordata + subphylum + + + + 7718 + Ciona + genus + + + CIOIN + + 7719 + CIOIN + Ciona intestinalis + Transparent sea squirt + Ascidia intestinalis + species + http://adl.brs.gov.au/marinepests/images/Ciona_intestinalis2.jpg + + + + CIOSA + + 51511 + CIOSA + Ciona savignyi + Pacific transparent sea squirt + species + http://www.pnwscuba.com/invasives/photos/ciona4.jpg + + + + + OIKDI + + 34765 + OIKDI + Oikopleura dioica + Tunicate + species + http://jellieszone.com/images/oikopleura.jpg + + + + + + BRAFL + + 7739 + BRAFL + Branchiostoma floridae + Florida lancelet + Amphioxus + species + http://www.nicerweb.com/sketches/video/PBS-ShapeOfLife/4.8_BonesBrawnBrains/Branchiostoma_floridae.jpg + + + + + Hemichordata & Echinodermata + + SACKO + + 10224 + SACKO + Saccoglossus kowalevskii + Agassiz, 1873 + Acorn worm + species + http://faculty.washington.edu/bjswalla/Hemichordata/Enteropneusta/SkowAK.jpg + + + + STRPU + + 7668 + STRPU + Strongylocentrotus purpuratus + Purple sea urchin + species + http://upload.wikimedia.org/wikipedia/commons/thumb/f/f4/Strongylocentrotus_purpuratus_1.jpg/724px-Strongylocentrotus_purpuratus_1.jpg + + + + + + Protostomia + + Ecdysozoa + + + 6656 + Arthropoda + phylum + + + + 197563 + Mandibulata + + + Pancrustacea + + + 33340 + Neoptera + subclass + + + + 33392 + Endopterygota + infraclass + + + Hymenoptera & Lepidoptera & Diptera + + Lepidoptera & Diptera + + + 7147 + Diptera + order + + + + 7157 + Culicidae + mosquitos + family + + + AEDAE + + 7159 + AEDAE + Aedes aegypti + Yellowfever mosquito + Culex aegypti + species + http://upload.wikimedia.org/wikipedia/commons/thumb/4/48/Aedes_aegypti_biting_human.jpg/757px-Aedes_aegypti_biting_human.jpg + + + + ANOGA + + 7165 + ANOGA + Anopheles gambiae + African malaria mosquito + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Anopheles_gambiae_Mosquito.jpg + + + + CULPI + + 7175 + CULPI + Culex pipiens + House mosquito + species + http://upload.wikimedia.org/wikipedia/commons/thumb/3/35/Culex_pipiens_2007-1.jpg/628px-Culex_pipiens_2007-1.jpg + + + + + + 32341 + Sophophora + subgenus + + + DROME + + 7227 + DROME + Drosophila melanogaster + Fruit fly + species + http://www.snv.jussieu.fr/bmedia/ATP/images/dro-mal1.jpg + + + + DROPS + + 46245 + DROPS + Drosophila pseudoobscura pseudoobscura + Fruit fly + subspecies + http://www.naylorgallery.com/wp-content/uploads/fly4stack01small.jpg + + + + + + BOMMO + + 7091 + BOMMO + Bombyx mori + Silk moth + species + http://lepidoptera.butterflyhouse.com.au/bomb/mori5.jpg + + + + + + 7400 + Apocrita + wasps, ants and bees + + + + 7434 + Aculeata + suborder + + + APIME + + 7460 + APIME + Apis mellifera + Honeybee + species + http://www.floridanature.org/photos/Apis_mellifera_6b_&_Trifolium_sp.,_TBP,_Tallahassee,_20030323.jpg + + + + + 12957 + ATTCE + Atta cephalotes + Linnaeus, 1758 + Leafcutter ant + species + http://upload.wikimedia.org/wikipedia/commons/4/4e/Leaf-cutting_ant.jpg + + + + + NASVI + + 7425 + NASVI + Nasonia vitripennis + Parasitic wasp + species + http://www.freshpond.org/nasonia.jpg + + + + + + TRICA + + 7070 + TRICA + Tribolium castaneum + Red flour beetle + species + http://www.ars.usda.gov/sp2UserFiles/Place/54300530/proj/tribolium/rfb.jpg + + + + + + 7524 + Hemiptera + order + + + ACYPI + + 7029 + ACYPI + Acyrthosiphon pisum + Pea aphid + species + http://www.agroatlas.ru/content/pests/Acyrthosiphon_pisum/Acyrthosiphon_pisum.jpg + + + + RHOPR + + 13249 + RHOPR + Rhodnius prolixus + Triatomid bug + species + http://upload.wikimedia.org/wikipedia/commons/b/b9/Rhodnius_prolixus.jpg + + + + + + + 6658 + Branchiopoda + class + + + + 6661 + ARTSF + Artemia franciscana + Brine shrimp + Artemia sanfranciscana + species + http://www.alireza-asem.ir/images/Artemia.jpg + + + + DAPPU + + 6669 + DAPPU + Daphnia pulex + Water flea + species + http://www.microscopy-uk.org.uk/mag/imgjun99/daphni.jpg + + + + + + + 61985 + Myriapoda + subphylum + + + + 7553 + Diplopoda + millipedes + class + + + + 118561 + Helminthomorpha + subclass + + + + 364406 + Antrokoreana gracilipes + species + http://www.gwbaekdu.com/data/2d/%EA%B3%A1%EC%84%9D%EA%B5%B4_4(%EB%93%B1%EC%A4%84%EA%B5%B4%EB%85%B8%EB%9E%98%EA%B8%B0).jpg + + + + + 174156 + NARAN + Narceus annularis + Millipede + species + http://i.pbase.com/g4/59/68959/2/59864073.narceus0705062large.jpg + + + + + + 52428 + Polyxenus lagurus + bristly millipede + species + http://upload.wikimedia.org/wikipedia/commons/5/54/Polyxenus.lagurus.1.jpg + + + + + + 7540 + Chilopoda + centipedes + class + + + + 29022 + SCUCO + Scutigera coleoptrata + House centipede + species + http://upload.wikimedia.org/wikipedia/commons/1/14/Scutigera_coleoptrata.JPG + + + + + 126957 + Strigamia maritima + species + http://images.marinespecies.org/resized/22703_strigamia-maritima-male-loch-linnhe-scotland.jpg + + + + + + + IXOSC + + 6945 + IXOSC + Ixodes scapularis + Black-legged tick + Deer tick + species + http://upload.wikimedia.org/wikipedia/commons/8/8c/Deertick.jpg + + + + + + 119089 + Chromadorea + class + + + + + nematode Clade V + + Caenorhabditis + + 6237 + Caenorhabditis + genus + + + CAEBR + + 6238 + CAEBR + Caenorhabditis briggsae + species + http://www.life.umd.edu/biology/haag/briggsae_herm.jpg + + + + CAEEL + + 6239 + CAEEL + Caenorhabditis elegans + species + http://homepages.ed.ac.uk/mbx/C_elegans/N2_picture.gif + + + + + PRIPA + + 54126 + PRIPA + Pristionchus pacificus + species + http://smithlabdb.usc.edu/images/Pristionchus_pacificus.jpg + + + + + BRUMA + + 6279 + BRUMA + Brugia malayi + Filarial nematode worm + species + http://upload.wikimedia.org/wikipedia/commons/4/4a/Brugia_malayi.JPG + + + + + + Lophotrochozoa + + Annelida & Mollusca + + + 6340 + Annelida + phylum + + + CAP + + 283909 + Capitella teleta + Blake, Grassle & Eckelbarger, 2009 + Capitella sp. I + species + http://genome.jgi-psf.org/Capca1/capitella.jpg + + + + + 6412 + HELRO + Helobdella robusta + Californian leech + species + http://genome.jgi-psf.org/Helro1/Helro_leech.jpg + + + + + + 6447 + Mollusca + phylum + + + + 6448 + Gastropoda + class + + + + 225164 + LOTGI + Lottia gigantea + Owl limpet + species + http://nathistoc.bio.uci.edu/Molluscs/OwlLimpet1.jpg + + + + + 6500 + APLCA + Aplysia californica + California sea hare + species + http://upload.wikimedia.org/wikipedia/commons/e/ef/Aplysia_californica.jpg + + + + + + 29159 + CRAGI + Crassostrea gigas + Thunberg, 1793 + Pacific oyster + Crassotrea gigas + Crassostrea angulata + Ostrea gigas + species + http://www.marlin.ac.uk/imgs/o_cragig.jpg + + + + + + + 6157 + Platyhelminthes + phylum + + + SCHMA + + 6183 + SCHMA + Schistosoma mansoni + Blood fluke + species + http://animaldiversity.ummz.umich.edu/site/resources/Grzimek_inverts/Trematoda/Schistosoma_mansoni.jpg/medium.jpg + + + + SCHMD + + 79327 + SCHMD + Schmidtea mediterranea + Freshwater planarian flatworm + species + http://www.astrobio.net/images/galleryimages_images/Gallery_Image_8136.jpg + + + + + + + + Cnidaria + + 6073 + Cnidaria + phylum + + + + 6102 + Hexacorallia + Ceriantipatharia + Zoantharia + subclass + + + + 45351 + NEMVE + Nematostella vectensis + Starlet sea anemone + species + http://genome.jgi-psf.org/Nemve1/Nematostellapolyp.jpg + + + + + 70779 + ACRDI + Acropora digitifera + Staghorn coral + species + http://www.botany.hawaii.edu/basch/uhnpscesu/htms/NPSAcorl/images/acropori/acrdigitif7.jpg + + + + + HYDMA + + 6085 + HYDMA + Hydra magnipapillata + Ito, 1947 + species + http://www.ncbi.nlm.nih.gov/UniGene/IMG/6085.gif + + + + + + TRIAD + + 10228 + TRIAD + Trichoplax adhaerens + Trichoplax reptans + species + http://ncse.com/files/images/trichoplax_ana_signorovitch.jpg + + + + + + + AMPQU + + 400682 + AMPQE + Amphimedon queenslandica + Hooper & Van Soest, 2006 + Sponge + Reniera sp. JGI-2005 + species + http://images.marinespecies.org/resized/46694_amphimedon-queenslandica.jpg + + + + + + 81524 + Codonosigidae + family + + + MONBE + + 81824 + MONBE + Monosiga brevicollis + Choanoflagellate + species + http://genome.jgi-psf.org/Monbr1/Monosiga_1.jpg + + + + + 946362 + SALS5 + Salpingoeca rosetta + Proterospongia sp. ATCC 50818 + Salpingoeca sp. ATCC 50818 + species + http://cfb.unh.edu/phycokey/Choices/Amoebae_Flagellates_Ciliates/Choanoflagellates/SALPINGOECA/salpingoeca_02_300x240_Kalle%20Olli_botany.ut.ee.jpg + + + + + + Ichthyophonida & Filasterea + + + 198625 + Ichthyophonida + order + + + + 4881 + AMOPA + Amoebidium parasiticum + species + http://www.nhm.ku.edu/~fungi/Ilustgenera/amoebi.jpg + + + + SPHARC + + 72019 + Sphaeroforma arctica + species + http://www.sciencedirect.com/cache/MiamiImageURL/1-s2.0-S0168952507000236-gr2.jpg + + + + + + Filasterea + + + + + + + CAPOWC + + 192875 + Capsaspora owczarzaki + species + http://www.berfrois.com/wp-content/uploads/2011/03/Capsaspora_owczarzaki.jpg + + + + MINVIB + + 134558 + Ministeria vibrans + species + http://ars.els-cdn.com/content/image/1-s2.0-S0959437X03001382-gr2.jpg + + + + + + + + Holomycota + Nucletmycea + + + + 4751 + Fungi + kingdom + + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota & Neocallimastigomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota & Chytridiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina & Blastocladiomycota + + Dikarya & Mucoromycotina & Kickxellomycotina + + Dikarya & Mucoromycotina + + + 451864 + Dikarya + subkingdom + + + + + + + + 4890 + Ascomycota + phylum + + + Pezizomycotina & Saccharomycetales + + + 147538 + Pezizomycotina + Euascomycota + subphylum + + + A five-gene phylogeny of Pezizomycotina + + + + + + 716546 + Leotiomyceta + + + Sordariomyceta & Dothideomycetes & Trichocomaceae & Lecanoromycetes + + Sordariomyceta & Dothideomycetes & Lecanoromycetes + + Sordariomyceta & Lecanoromycetes + + + 715989 + Sordariomyceta + + + + 147550 + Sordariomycetes + class + + + Magnaporthales & Hypocreales + + + 5125 + Hypocreales + order + + + ACRALC + + 398408 + Acremonium alcalophilum + species + http://genome.jgi-psf.org/public/Acral1_c3a/Acral1.jpg + + + + GIBZE + + 5518 + GIBZE + Gibberella zeae + Wheat head blight fungus + Fusarium graminearum + species + http://www.apsnet.org/publications/apsnetfeatures/PublishingImages/1999%20Features/Fusarium02sm.jpg + + + + + 29875 + HYPVI + Hypocrea virens + Gliocladium virens + Trichoderma virens + Gliocladium flavofuscum + species + http://www.ars.usda.gov/images/docs/10920_11114/Stroma1.jpg + + + + + MAGGR + + 148305 + MAGGR + Magnaporthe grisea + Rice blast fungus + Pyricularia grisea + species + http://www.forestryimages.org/images/768x512/5369002.jpg + + + + + + 5139 + Sordariales + order + + + + 35718 + Chaetomiaceae + family + + + + 35719 + Thielavia + genus + + + MYCTHE + + 573728 + Myceliophthora thermophila + (Apinis) Oorschot 1977 + Sporotrichum thermophilum + anamorph of Thielavia heterothallica + species + http://genome.jgi-psf.org/public/Spoth2/Spoth0.jpg + + + + THITER + + 193532 + Thielavia terrestris + Malloch & Cain 1972 + Acremonium alabamense + species + http://genome.jgi-psf.org/public/Thite2/Thite1.jpg + + + + + CHAGB + + 1029505 + CHAGB + Chaetomium globosum + Kunze 1817 + Soil fungus + species + + + + + NEUCR + + 5141 + NEUCR + Neurospora crassa + species + + + + + + + 147548 + Leotiomycetes + class + + + + 28983 + Sclerotiniaceae + family + + + + 40559 + BOTFU + Botryotinia fuckeliana + Noble rot fungus + Botrytis cinerea + species + + + + + 5180 + SCLSC + Sclerotinia sclerotiorum + White mold + Whetzelinia sclerotiorum + species + + + + + OIDMAI + + 78148 + Oidiodendron maius + species + + + + + + + 388435 + Lecanoromycetidae + subclass + + + CLAGRA + + 27339 + Cladonia grayi + Cladonia grayi Merr + species + http://upload.wikimedia.org/wikipedia/commons/b/b6/Cladonia_grayi-11.jpg + + + + XANPAR + + 107463 + Xanthoria parietina + species + http://upload.wikimedia.org/wikipedia/commons/thumb/7/70/Xanthoria_parietina_%2806_03_31%29.jpg/800px-Xanthoria_parietina_%2806_03_31%29.jpg + + + + + + + 147541 + Dothideomycetes + class + + + A class-wide phylogenetic assessment of Dothideomycetes + + + + 134362 + Capnodiales + order + + + + 41254 + Mycosphaerella + genus + + + MYCFI + + 83344 + Mycosphaerella fijiensis + species + + + + MYCGR + + 54734 + MYCGR + Mycosphaerella graminicola + Speckled leaf blotch fungus + Septoria tritici + species + + + + MYCPJ + + 64363 + MYCPJ + Mycosphaerella pini + Red band needle blight disease fungus + Dothistroma septosporum + Dothistroma pini + species + + + + MYCPOP + + 85929 + Mycosphaerella populorum + Septoria musiva + species + + + + + BAUCOM + + 430998 + Baudoinia compniacensis + species + http://www.diark.org/img/species_pict/Baudoinia_compniacensis + + + + + + 715340 + Pleosporineae + suborder + + + + 28556 + Pleosporaceae + family + + + Cochliobolus & Setosphaeria + + + 5015 + Cochliobolus + genus + + + COCHE + + 5016 + COCHE + Cochliobolus heterostrophus + Drechslera maydis + species + + + + + 45130 + COCSA + Cochliobolus sativus + Bipolaris sorokiniana + species + http://www.plantmanagementnetwork.org/pub/php/diagnosticguide/2003/rootrot/image/mathre6sm.jpg + + + + + + 93612 + SETTU + Setosphaeria turcica + (Luttr.) K.J. Leonard & Suggs, (1974) + Northern corn leaf blight disease fungus + Exserohilum turcicum + Helminthosporium turcicum + species + http://openi.nlm.nih.gov/imgs/rescaled512/3017769_1471-2229-10-103-3.png + + + + + PYRTR + + 426418 + PYRTR + Pyrenophora tritici-repentis (strain Pt-1C-BFP) + Wheat tan spot fungus + Drechslera tritici-repentis + + + + + PHANO + + 13684 + PHANO + Phaeosphaeria nodorum + Glume blotch fungus + Septoria nodorum + species + + + + + + + + 28568 + Trichocomaceae + family + + + Neosartorya_Emericella + + EMENI + + 195546 + EMENI + Emericella nidulans + Vuill. 1927 + Aspergillus nidulans + species + + + + NEOFI + + 331117 + NEOFI + Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) + Aspergillus fischerianus + + + + + + 5052 + Aspergillus + genus + + + + Aspergillus flavus + + + + 5059 + ASPFL + Aspergillus flavus + Link 1809 + Petromyces flavus + species + http://www.schoolproject2.ewebsite.com/img/original/21/aspergillus-flavus.jpg + + + + + 332952 + ASPFN + Aspergillus flavus (strain ATCC 200026 / FGSC A1120 / NRRL 3357 / JCM 12722 / SRRC 167) + Aspergillus flavus NRRL3357 + + + + + ASPNG + + 5061 + ASPNG + Aspergillus niger + species + + + + + + + + 33183 + Onygenales + order + + + COCIM + + 5501 + COCIM + Coccidioides immitis + Valley fever fungus + species + + + + UNCRE + + 336963 + UNCRE + Uncinocarpus reesii (strain UAMH 1704) + + + + + + + 656061 + TUBMM + Tuber melanosporum (strain Mel28) + Perigord black truffle + Tuber melanosporum Mel28 + http://www.trufamania.com/trufas/Tuber%20melanosporum02.jpg + + + + + + 4892 + Saccharomycetales + budding yeasts + order + + + Candida & Debaryomyces & Saccharomycetacea + + + 4893 + Saccharomycetaceae + family + + + Saccharomyces_Pichia + + Saccharomyces + + SACCA + + 27288 + SACCA + Saccharomyces castellii + Yeast + Saccharomyces castellii + species + + + + YEAST + + 4932 + YEAST + Saccharomyces cerevisiae + Baker's yeast + species + + + + + PICAN + + 4905 + PICAN + Pichia angusta + Yeast + Hansenula polymorpha + species + + + + + Kluyveromyces & Ashbya + + Kluyveromyces + + KLULA + + 28985 + KLULA + Kluyveromyces lactis + Yeast + Candida sphaerica + species + + + + KLUWA + + 4914 + KLUWA + Kluyveromyces waltii + Yeast + species + + + + + ASHGO + + 33169 + ASHGO + Ashbya gossypii + Yeast + Eremothecium gossypii + species + + + + + + Candida & Debaryomyces + + + 5475 + Candida + genus + + + CANAL + + 5476 + CANAL + Candida albicans + Yeast + species + + + + CANTR + + 5482 + CANTR + Candida tropicalis + Yeast + species + + + + + DEBHA + + 4959 + DEBHA + Debaryomyces hansenii + Yeast + Torulaspora hansenii + species + + + + + + YARLI + + 4952 + YARLI + Yarrowia lipolytica + Candida lipolytica + species + + + + + + + 451866 + Taphrinomycotina + subphylum + + + Pneumocystidomycetes & Schizosaccharomycetes + + + 4895 + Schizosaccharomyces + genus + + + SCHJP + + 4897 + SCHJP + Schizosaccharomyces japonicus + Fission yeast + species + + + + + 4899 + SCHOT + Schizosaccharomyces octosporus + Fission yeast + species + http://www.dipbot.unict.it/sistematica/Immagini/12002.JPG + + + + SCHPO + + 4896 + SCHPO + Schizosaccharomyces pombe + Fission yeast + species + + + + + PNECA + + 4754 + PNECA + Pneumocystis carinii + species + + + + + SAICOM + + 5606 + Saitoella complicata + species + + + + + + + 5204 + Basidiomycota + phylum + + + Agaricomycotina & Ustilaginomycotina & Pucciniomycotina + + Agaricomycotina & Ustilaginomycotina + + + 5302 + Agaricomycotina + + + + 155619 + Homobasidiomycetes + class + + + Evolution of complex fruiting–body morphologies in homobasidiomycetes + + + Agaricomycetidae & Gloeophyllum & Aphyllophorales + + Agaricomycetidae & Gloeophyllum + + + 452333 + Agaricomycetidae + subclass + + + Agaricales & Boletales + + + 5338 + Agaricales + order + + + Agaricus & Coprinopsis & Laccaria & Pleurotus + + Agaricus & Coprinopsis & Laccaria + + Agaricus & Coprinopsis + + AGABB + + 192524 + Agaricus bisporus var. burnettii + http://www.mykoweb.com/CAF/photos/Agaricus_bisporus(fs-03).jpg + + + + COPCI + + 5346 + COPCI + Coprinopsis cinerea + Inky cap fungus + Hormographiella aspergillata + species + http://upload.wikimedia.org/wikipedia/commons/e/e9/Coprinopsis.cinerea.-.lindsey.jpg + + + + + + 29883 + LACBI + Laccaria bicolor + Bicoloured deceiver + Laccaria laccata var. bicolor + species + http://botit.botany.wisc.edu/toms_fungi/images/L_bicolor_NM.JPG + + + + + GYMLUX + + 206324 + Gymnopus luxurians + species + http://www.mushroomexpert.com/images/kuo3/gymnopus_luxurians_02.jpg + + + + + PLEOS + + 5322 + PLEOS + Pleurotus ostreatus + Oyster mushroom + White-rot fungus + species + http://botit.botany.wisc.edu/toms_fungi/images/post1.jpg + + + + + + 68889 + Boletales + Melanogastrales + Sclerodermatales + order + + + + 227334 + Coniophorineae + suborder + + + CONPUT + + 80637 + Coniophora puteana + Schum. ex Fries + cellar fungus + species + http://genome.jgi-psf.org/public/Conpu1/P1240066_dp.jpg + + + + SERLAC + + 85982 + Serpula lacrymans + dry rot fungus + species + http://www.anbg.gov.au/fungi/images/0160.jpg + + + + + HYDPIN + + 388859 + Hydnomerulius pinastri + Spiny dry rot fungus + species + http://mycoweb-stv.narod.ru/fungi/Submitted/STV1/Hydnomerulius_pinastri_1_STV_20100913.jpg + + + + + + JAAARG + + 202697 + Jaapia argillacea + species + http://mycor.nancy.inra.fr/blogGenomes/wp-content/uploads/2012/08/IMG_21261.jpg + + + + + GLOTR + + 104355 + GLOTR + Gloeophyllum trabeum + Brown rot fungus + species + http://www.commanster.eu/commanster/Mushrooms/Basidio/SpBasidio/Gloeophyllum.trabeum.jpg + + + + + + 5303 + Aphyllophorales + Gäum. (1926) + Shelf Fungi + Polyporales + order + + + + 83233 + Coriolaceae + family + + + The phylogenetic distribution of resupinate forms across the major clades of mushroom-forming fungi (Homobasidiomycetes) + + + + + + + Postia & Fomitopsis & Wolfiporia & Trametes + + Antrodia clade + + Antrodia clade + + + FOMPIN + + 40483 + Fomitopsis pinicola + P. Karst. 1881 + Red banded polypore + Fomes pinicola + species + http://content6.eol.org/content/2009/06/07/01/48471_large.jpg + + + + POSPL + + 104341 + Postia placenta + species + http://www.commanster.eu/commanster/Mushrooms/Polypore/SuPolypore/Postia.placenta.jpg + + + + + core polyporoid clade + + core polyporoid clade + + + TRAVE + + 5325 + TRAVE + Trametes versicolor + (L.) Lloyd 1921 + White-rot fungus + Coriolus versicolor + Bjerkandera versicolor + species + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-1).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(bab-2).jpg + http://www.mykoweb.com/CAF/photos/Trametes_versicolor(mgw-01).jpg + http://genome.jgi-psf.org/public/Trave1/Trametes_versicolor.JPG + + + + WOLCOC + + 81056 + Wolfiporia cocos + species + http://toolate.s7.coreserver.jp/kinoko/fungi/wolfiporia_cocos/w_cocos_002.jpg + + + + + + CERSU + + 42742 + CERSU + Ceriporiopsis subvermispora + species + + + + + DICSQU + + 114155 + Dichomitus squalens + (P. Karst.) D. A. Reid 1965 + Red rot + Polyporus anceps + species + http://www.fs.fed.us/r3/resources/health/field-guide/images/large/sds-f199-large.jpg + + + + + + HETAN + + 13563 + HETAN + Heterobasidion annosum + Root rot fungus + species + + + + + + 5215 + Tremellaceae + family + + + CRYNE + + 5207 + CRYNE + Cryptococcus neoformans + Filobasidiella neoformans + species + + + + TREME + + 1029985 + TREME + Tremella mesenterica + Pers. 1800 + Jelly fungus + Yellow Brain + Tremella lutescens + species + + + + + + + 452284 + Ustilaginomycotina + subphylum + + + + 425265 + MALGO + Malassezia globosa (strain ATCC MYA-4612 / CBS 7966) + Dandruff-associated fungus + + + + USTMA + + 5270 + USTMA + Ustilago maydis + Smut fungus + species + + + + + + + 29000 + Pucciniomycotina + subphylum + + + + 5258 + Pucciniales + rusts + order + + + MELLP + + 156696 + MELLP + Melampsora laricis-populina + Kleb. 1902 + Melampsora larici-populina + Melampsora laricipopulina + species + + + + PUCGR + + 1029947 + PUCGR + Puccinia graminis + Pers. 1794 + Black stem rust fungus + Wheat rust + species + + + + + + 89013 + mitosporic Sporidiobolales + + + RHOGR + + 29898 + RHOGR + Rhodotorula graminis + Yeast + species + + + + SPORO + + 1013696 + Sporobolomyces roseus + Kluyver & C. B. Niel 1924 + species + + + + + + + WALSE + + 148960 + WALSE + Wallemia sebi + species + + + + + + + 451507 + Mucoromycotina + subphylum + + + + 34489 + Mucoraceae + family + + + MUCCI + + 36080 + MUCCI + Mucor circinelloides + Mucor griseo-roseus + species + + + + PHYBL + + 4837 + PHYBL + Phycomyces blakesleeanus + species + + + + RHIOR + + 64495 + RHIOR + Rhizopus oryzae + Rhizopus delemar + species + + + + + MORVER + + 78898 + Mortierella verticillata + species + http://www.diark.org/img/species_pict/Mortierella_verticillata + + + + + + COEREV + + 61392 + Coemansia reversa + species + + + + + + 28583 + ALLMA + Allomyces macrogynus + species + + + + + + 4761 + Chytridiomycota + chytrids + Mastigomycotina + phylum + + + + 451435 + Chytridiomycetes + class + + + + 109871 + BATDE + Batrachochytrium dendrobatidis + Frog chytrid fungus + species + + + + + 109760 + SPIPN + Spizellomyces punctatus + species + + + + + GONPRO + + 157984 + Gonapodya prolifera + A. 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