From d5c825f47c13faafe6330906ae31fe2ad78bb22f Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 16 Oct 2017 15:04:57 +0100 Subject: [PATCH 1/1] JAL-2777 patch for whitespace chain --- src/jalview/ext/rbvi/chimera/AtomSpecModel.java | 9 +++++---- 1 file changed, 5 insertions(+), 4 deletions(-) diff --git a/src/jalview/ext/rbvi/chimera/AtomSpecModel.java b/src/jalview/ext/rbvi/chimera/AtomSpecModel.java index f923f7f..39d6704 100644 --- a/src/jalview/ext/rbvi/chimera/AtomSpecModel.java +++ b/src/jalview/ext/rbvi/chimera/AtomSpecModel.java @@ -120,7 +120,7 @@ public class AtomSpecModel for (String chain : modelData.keySet()) { - chain = chain.trim(); + chain = " ".equals(chain) ? chain : chain.trim(); List rangeList = modelData.get(chain); @@ -192,9 +192,10 @@ public class AtomSpecModel { sb.append(start).append("-").append(end); } - if (chain.length() > 0) - { - sb.append(".").append(chain); + + sb.append("."); + if (!" ".equals(chain)) { + sb.append(chain); } } } -- 1.7.10.2