From d704670a936df11fbaf75abbb6d07493d70993a9 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Fri, 9 Feb 2007 17:50:33 +0000
Subject: [PATCH] added 'show overview' preference.

---
 src/jalview/gui/AlignFrame.java     |    5 +++++
 src/jalview/gui/Preferences.java    |    5 ++++-
 src/jalview/jbgui/GPreferences.java |    8 ++++++++
 3 files changed, 17 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index b281767..b2d41e8 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -145,6 +145,11 @@ public class AlignFrame
       wrapMenuItem_actionPerformed(null);
     }
 
+    if (jalview.bin.Cache.getDefault("SHOW_OVERVIEW",false))
+    {
+      this.overviewMenuItem_actionPerformed(null);
+    }
+
     addKeyListener();
 
   }
diff --git a/src/jalview/gui/Preferences.java b/src/jalview/gui/Preferences.java
index e16aa42..e69492c 100755
--- a/src/jalview/gui/Preferences.java
+++ b/src/jalview/gui/Preferences.java
@@ -99,6 +99,7 @@ public class Preferences
     conservation.setSelected(Cache.getDefault("SHOW_CONSERVATION", true));
     quality.setSelected(Cache.getDefault("SHOW_QUALITY", true));
     identity.setSelected(Cache.getDefault("SHOW_IDENTITY", true));
+    openoverv.setSelected(Cache.getDefault("SHOW_OVERVIEW", false));
 
     for (int i = 0; i < 13; i++)
     {
@@ -218,7 +219,9 @@ public class Preferences
     Cache.applicationProperties.setProperty("SHOW_FULLSCREEN",
                                             Boolean.toString(fullScreen.
         isSelected()));
-
+    Cache.applicationProperties.setProperty("SHOW_OVERVIEW",
+                                            Boolean.toString(openoverv.
+        isSelected()));
     Cache.applicationProperties.setProperty("SHOW_ANNOTATIONS",
                                             Boolean.
                                             toString(annotations.isSelected()));
diff --git a/src/jalview/jbgui/GPreferences.java b/src/jalview/jbgui/GPreferences.java
index f5e6604..dad0f7f 100755
--- a/src/jalview/jbgui/GPreferences.java
+++ b/src/jalview/jbgui/GPreferences.java
@@ -112,6 +112,7 @@ public class GPreferences
   protected JCheckBox wrap = new JCheckBox();
   protected JCheckBox rightAlign = new JCheckBox();
   protected JCheckBox idItalics = new JCheckBox();
+  protected JCheckBox openoverv = new JCheckBox();
   /**
    * Creates a new GPreferences object.
    */
@@ -394,6 +395,12 @@ public class GPreferences
     idItalics.setHorizontalAlignment(SwingConstants.RIGHT);
     idItalics.setHorizontalTextPosition(SwingConstants.LEADING);
     idItalics.setText("Sequence Name Italics");
+    openoverv.setFont(new java.awt.Font("Verdana", Font.PLAIN, 11));
+    openoverv.setActionCommand("Open Overview");
+    openoverv.setHorizontalAlignment(SwingConstants.RIGHT);
+    openoverv.setHorizontalTextPosition(SwingConstants.LEADING);
+    openoverv.setText("Open Overview Window");
+    openoverv.setBounds(new Rectangle(169, 17, 152, 23));
     jPanel2.add(fullScreen);
     jPanel2.add(annotations);
     jPanel2.add(seqLimit);
@@ -406,6 +413,7 @@ public class GPreferences
     jPanel2.add(colourLabel);
     jPanel2.add(sortLabel);
     jPanel2.add(startupCheckbox);
+    visualTab.add(openoverv);
     visualTab.add(startupFileTextfield);
     visualTab.add(sortby);
     visualTab.add(colour);
-- 
1.7.10.2