From d7341dba193010ca83218405e7ea76e38e473ab9 Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Wed, 9 Mar 2011 01:20:33 +0000 Subject: [PATCH] Edited wiki page PhyloBioRuby through web user interface. --- wiki/PhyloBioRuby.wiki | 18 +++++++++--------- 1 file changed, 9 insertions(+), 9 deletions(-) diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki index 0a9f1b6..e2f013d 100644 --- a/wiki/PhyloBioRuby.wiki +++ b/wiki/PhyloBioRuby.wiki @@ -63,14 +63,14 @@ end ==== Setting the Output Format ==== -The following symbols determine the output format. +The following symbols determine the output format: - * ClustalW: `:clustal` - * FASTA: `:fasta` - * PHYLIP interleaved (will truncate sequence names to no more than 10 characters): `:phylip` - * PHYLIP non-interleaved (will truncate sequence names to no more than 10 characters): `:phylipnon` - * MSF: `:msf` - * Molphy: `:molphy` + * `:clustal` for ClustalW + * `:fasta` for FASTA + * `:phylip`for PHYLIP interleaved (will truncate sequence names to no more than 10 characters) + * `:phylipnon` for PHYLIP non-interleaved (will truncate sequence names to no more than 10 characters) + * `:msf` for MSF + * `:molphy` for Molphy For example, the following writes in PHYLIP's non-interleaved format: @@ -97,8 +97,8 @@ For Bio::!FlatFile entries: entry.to_biosequence.output(:genbank) }}} -Constants for available formats are: - * Genbank :genbank +The following symbols determine the output format. + *`:genbank` for Genbank == Calculating Multiple Sequence Alignments == -- 1.7.10.2