From d89184c79f5a3a02f95e33bee0e3f94e4aedf72f Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Thu, 14 Jun 2012 11:48:12 +0100
Subject: [PATCH] JAL-976 - make sure annotation panel is updated to grey out
 any stale annotation rows

---
 src/jalview/ws/jws2/JabawsAlignCalcWorker.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
index df61495..d84f365 100644
--- a/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
+++ b/src/jalview/ws/jws2/JabawsAlignCalcWorker.java
@@ -412,7 +412,7 @@ public abstract class JabawsAlignCalcWorker extends AlignCalcWorker
   boolean checkDone()
   {
     calcMan.notifyStart(this);
-    // ap.paintAlignment(false);
+    ap.paintAlignment(false);
     while (!calcMan.notifyWorking(this))
     {
       if (calcMan.isWorking(this))
-- 
1.7.10.2