From d8c0411d0b6ba5c5f6d9bcd0c12b6ffa2dea09ee Mon Sep 17 00:00:00 2001
From: Charles Ofoegbu <tcnofoegbu@dundee.ac.uk>
Date: Tue, 20 Jan 2015 17:25:35 +0000
Subject: [PATCH] clean up

---
 .../api/analysis/AnnotationFilterParameter.java    |  101 --------------------
 utils/getJavaVersion.class                         |  Bin 0 -> 3252 bytes
 2 files changed, 101 deletions(-)
 delete mode 100644 src/jalview/api/analysis/AnnotationFilterParameter.java
 create mode 100644 utils/getJavaVersion.class

diff --git a/src/jalview/api/analysis/AnnotationFilterParameter.java b/src/jalview/api/analysis/AnnotationFilterParameter.java
deleted file mode 100644
index c649972..0000000
--- a/src/jalview/api/analysis/AnnotationFilterParameter.java
+++ /dev/null
@@ -1,101 +0,0 @@
-package jalview.api.analysis;
-
-import java.util.ArrayList;
-import java.util.List;
-
-public class AnnotationFilterParameter
-{
-  public enum ThresholdType
-  {
-    NO_THRESHOLD, BELOW_THRESHOLD, ABOVE_THRESHOLD;
-  }
-
-  public enum SearchableAnnotationField
-  {
-    DISPLAY_STRING, DESCRIPTION;
-  }
-  private ThresholdType thresholdType;
-
-  private float thresholdValue;
-
-  private boolean filterAlphaHelix = false;
-
-  private boolean filterBetaSheet = false;
-
-  private boolean filterTurn = false;
-
-  private String regexString;
-
-  private List<SearchableAnnotationField> regexSearchFields = new ArrayList<SearchableAnnotationField>();
-
-  public ThresholdType getThresholdType()
-  {
-    return thresholdType;
-  }
-
-  public void setThresholdType(ThresholdType thresholdType)
-  {
-    this.thresholdType = thresholdType;
-  }
-
-  public float getThresholdValue()
-  {
-    return thresholdValue;
-  }
-
-  public void setThresholdValue(float thresholdValue)
-  {
-    this.thresholdValue = thresholdValue;
-  }
-
-  public String getRegexString()
-  {
-    return regexString;
-  }
-
-  public void setRegexString(String regexString)
-  {
-    this.regexString = regexString;
-  }
-
-  public List<SearchableAnnotationField> getRegexSearchFields()
-  {
-    return regexSearchFields;
-  }
-
-  public void addRegexSearchField(SearchableAnnotationField regexSearchField)
-  {
-    this.regexSearchFields.add(regexSearchField);
-  }
-
-  public boolean isFilterAlphaHelix()
-  {
-    return filterAlphaHelix;
-  }
-
-  public void setFilterAlphaHelix(boolean alphaHelix)
-  {
-    this.filterAlphaHelix = alphaHelix;
-  }
-
-  public boolean isFilterBetaSheet()
-  {
-    return filterBetaSheet;
-  }
-
-  public void setFilterBetaSheet(boolean betaSheet)
-  {
-    this.filterBetaSheet = betaSheet;
-  }
-
-  public boolean isFilterTurn()
-  {
-    return filterTurn;
-  }
-
-  public void setFilterTurn(boolean turn)
-  {
-    this.filterTurn = turn;
-  }
-
-}
diff --git a/utils/getJavaVersion.class b/utils/getJavaVersion.class
new file mode 100644
index 0000000000000000000000000000000000000000..08659150d10571bb6c3c3e51a22de34b30e8eaf3
GIT binary patch
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-- 
1.7.10.2