From d96a2f4679fa106e7beed4466f63a9191faa5b90 Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 1 Jun 2012 10:57:51 +0100
Subject: [PATCH] JWS-36 patched Scores writer to put spaces between ranges
 and space separated scores

---
 datamodel/compbio/data/sequence/Score.java |   11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/datamodel/compbio/data/sequence/Score.java b/datamodel/compbio/data/sequence/Score.java
index ec4cadc..fed0ef0 100644
--- a/datamodel/compbio/data/sequence/Score.java
+++ b/datamodel/compbio/data/sequence/Score.java
@@ -187,12 +187,13 @@ public class Score implements Comparable<Score> {
 	 * 
 	 * <pre>
 	 * {@code
-	 * #MethodName <space separated list of values>
+	 * #MethodName [comma separated list of ranges] <space separated list of values>
 	 * 	  
 	 * For example:
 	 * 	 
 	 * #KABAT 0.2 0.3 0.2 0 0.645 0.333 1 1 0 0
 	 * #SMERFS 0.645 0.333 1 1 0 0 0.2 0.3 0.2 0
+	 * #COILS 22-33, 44-56 0.121 3.212
 	 * }
 	 * </pre>
 	 * 
@@ -212,17 +213,17 @@ public class Score implements Comparable<Score> {
 			throw new NullPointerException("Writer must be provided!");
 		}
 		for (Score score : scores) {
-			writer.write("#" + score.method + " ");
+			writer.write("#" + score.method);
 			int count = score.ranges.size();
 			for (Range range : score.ranges) {
 				count--;
-				writer.write(range.toString());
+				writer.write(" "+range.toString());
 				if (count != 0) {
-					writer.write(", ");
+					writer.write(",");
 				}
 			}
 			for (Float scoreVal : score.scores) {
-				writer.write(NUMBER_FORMAT.format(scoreVal) + " ");
+				writer.write(" "+NUMBER_FORMAT.format(scoreVal));
 			}
 			writer.write("\n");
 			writer.flush();
-- 
1.7.10.2