From db52eb78dae4debd37d0a325ba55e5a33238df31 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 14 Aug 2006 15:11:12 +0000
Subject: [PATCH] Stop loading must be before JOptionPane, 1.5 bug

---
 src/jalview/gui/Jalview2XML.java |    6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index d6a0112..1f2cbb1 100755
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -820,6 +820,9 @@ public class Jalview2XML
         }
         catch(java.net.UnknownHostException ex)
         {
+          if (Desktop.instance != null)
+            Desktop.instance.stopLoading();
+
           ex.printStackTrace();
           System.err.println("Couldn't locate Jalview XML file : " +
               ex + "\n");
@@ -831,6 +834,9 @@ public class Jalview2XML
         }
         catch (Exception ex)
         {
+          if (Desktop.instance != null)
+            Desktop.instance.stopLoading();
+
           //Is Version 1 Jar file?
           af =  new Jalview2XML_V1().LoadJalviewAlign(file);
 
-- 
1.7.10.2