From dc47015a9863a72d862dc9a6f7a4df7d8e5dfb62 Mon Sep 17 00:00:00 2001 From: Daniel Luke Barton Date: Thu, 29 Aug 2013 16:33:46 +0100 Subject: [PATCH] conf/Executable.properties and compilebin.sh updated for linux. --- binaries/src/compilebin.sh | 9 +++++++++ conf/Executable.properties | 2 +- 2 files changed, 10 insertions(+), 1 deletion(-) mode change 100644 => 100755 binaries/src/compilebin.sh diff --git a/binaries/src/compilebin.sh b/binaries/src/compilebin.sh old mode 100644 new mode 100755 index 441cdb0..87ce823 --- a/binaries/src/compilebin.sh +++ b/binaries/src/compilebin.sh @@ -84,3 +84,12 @@ make echo "DONE" cd .. +echo "Compiling Vienna ..." +cd ViennaRNA +chmod +x ./configure +./configure +make clean +make +echo "DONE" +cd .. + diff --git a/conf/Executable.properties b/conf/Executable.properties index 9641fb9..333477e 100644 --- a/conf/Executable.properties +++ b/conf/Executable.properties @@ -197,7 +197,7 @@ aacon.presets.file=conf/settings/AAConPresets.xml #aacon.cluster.settings=-q 64bit-pri.q -pe smp 4 -l ram=1700M -l h_cpu=24:00:00 ##### RNAALIFOLD CONFIGURATION ###### -# just the windows binary at the moment local.rnaalifold.bin.windows=binaries/windows/ViennaRNA/RNAalifold.exe +local.rnaalifold.bin=binaries/src/ViennaRNA/Progs/RNAalifold rnaalifold.parameters.file=conf/settings/RNAalifoldParameters.xml -- 1.7.10.2