From dc6f1dbbd2c3e951c94f969703d595ea22e33f73 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Tue, 8 May 2007 11:01:06 +0000 Subject: [PATCH] state jmol 11.0.2 --- help/html/releases.html | 98 +++++++++++++++++++++++------------------------ help/html/whatsNew.html | 2 +- 2 files changed, 50 insertions(+), 50 deletions(-) diff --git a/help/html/releases.html b/help/html/releases.html index 79cf1df..e93bf30 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -3,7 +3,7 @@

Release History

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Righthand label on wrapped alignments shows correct value

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Copy & Paste order of sequences maintains alignment order.

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Release	New Features	Issues Resolved	2.3 8/5/07	- Jmol 11 integration + Jmol 11.0.2 integration PDB views stored in Jalview XML files Slide sequences Edit sequence in place @@ -40,7 +40,7 @@
2.2.1 12/2/07	@@ -59,55 +59,55 @@ Annotation file export / import bugs fixed PNG / EPS image output bugs fixed
2.2 27/11/06	- Multiple views on alignment - Sequence feature editing - "Reload" alignment - "Save" to current filename - Background dependent text colour - Right align sequence ids - User-defined lower case residue colours - Format Menu - Select Menu - Menu item accelerator keys - Control-V pastes to current alignment - Cancel button for DAS Feature Fetching - PCA and PDB Viewers zoom via mouse roller - User-defined sub-tree colours and sub-tree selection + Multiple views on alignment + Sequence feature editing + "Reload" alignment + "Save" to current filename + Background dependent text colour + Right align sequence ids + User-defined lower case residue colours + Format Menu + Select Menu + Menu item accelerator keys + Control-V pastes to current alignment + Cancel button for DAS Feature Fetching + PCA and PDB Viewers zoom via mouse roller + User-defined sub-tree colours and sub-tree selection 'New Window' button on the 'Output to Text box'	- New memory efficient Undo/Redo System - Optimised symbol lookups and conservation/consensus calculations - Region Conservation/Consensus recalculated after edits - Fixed Remove Empty Columns Bug (empty columns at end of alignment) - Slowed DAS Feature Fetching for increased robustness. - Made angle brackets in ASCII feature descriptions display correctly - Re-instated Zoom function for PCA - Sequence descriptions conserved in web service analysis results - Uniprot ID discoverer uses any word separated by ∣ - WsDbFetch query/result association resolved - Tree leaf to sequence mapping improved + New memory efficient Undo/Redo System + Optimised symbol lookups and conservation/consensus calculations + Region Conservation/Consensus recalculated after edits + Fixed Remove Empty Columns Bug (empty columns at end of alignment) + Slowed DAS Feature Fetching for increased robustness. + Made angle brackets in ASCII feature descriptions display correctly + Re-instated Zoom function for PCA + Sequence descriptions conserved in web service analysis results + Uniprot ID discoverer uses any word separated by ∣ + WsDbFetch query/result association resolved + Tree leaf to sequence mapping improved Smooth fonts switch moved to FontChooser dialog box.
2.1.1 12/9/06	Copy consensus sequence to clipboard	- Image output - rightmost residues are rendered if sequence id panel + Image output - rightmost residues are rendered if sequence id panel has been resized Image output - all offscreen group boundaries are rendered - Annotation files with sequence references - all elements in file are + Annotation files with sequence references - all elements in file are relative to sequence position Mac Applet users can use Alt key for group editing
2.1 22/8/06	@@ -130,20 +130,20 @@ Annotation files with sequence references bug fixed
2.08.1 2/5/06	Change case of selected region from Popup menu Choose to match case when searching - Middle mouse button and mouse movement can compress / expand the visible + Middle mouse button and mouse movement can compress / expand the visible width and height of the alignment	Annotation Panel displays complete JNet results
2.08b 18/4/06
2.08 10/4/06	@@ -167,11 +167,11 @@	Drag & Drop fixed on Linux - Jalview Archive file faster to load/save, sequence descriptions saved. + Jalview Archive file faster to load/save, sequence descriptions saved.
2.07 12/12/05	@@ -179,7 +179,7 @@ Sequence Feature retrieval and display enhanced Choose to output sequence start-end after sequence name for file output Sequence Fetcher WSDBFetch@EBI - Applet can read feature files, PDB files and can be used for HTML + Applet can read feature files, PDB files and can be used for HTML form input	@@ -188,7 +188,7 @@ File IO bugs
2.06 28/9/05	@@ -200,7 +200,7 @@ Runs with -nodisplay from command line
2.05b 15/9/05	@@ -214,7 +214,7 @@ Several GUI bugs resolved
2.05 30/8/05	@@ -224,7 +224,7 @@ Several GUI bugs resolved
2.04 24/8/05	@@ -235,7 +235,7 @@ Improved loading of Jalview files
2.03 18/8/05	@@ -251,7 +251,7 @@ InstallAnywhere download for Sparc Solaris
2.02 18/7/05
2.01 12/7/05	@@ -274,12 +274,12 @@ FileChooser sorts columns. Can remove groups one by one. Filechooser icons installed. - Finder ignores return character when searching. Return key will initiate + Finder ignores return character when searching. Return key will initiate a search.
2.0 20/6/05	diff --git a/help/html/whatsNew.html b/help/html/whatsNew.html index 0f9f7d2..75afae8 100755 --- a/help/html/whatsNew.html +++ b/help/html/whatsNew.html @@ -6,7 +6,7 @@ What's new ? Jalview Version 2.3 - Jmol 11 integration + Jmol 11.0.2 integration PDB views stored in Jalview XML files Slide sequences Edit sequence in place -- 1.7.10.2