From dcba450558710d0fb2466616d1d05d02d6a346f7 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 4 Apr 2006 09:31:05 +0000
Subject: [PATCH] Allows loading of archive XML

---
 src/jalview/gui/UserDefinedColours.java |   39 +++++++++++++++++++++++++++----
 1 file changed, 34 insertions(+), 5 deletions(-)

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 556ae41..ede020c 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -423,10 +423,14 @@ public class UserDefinedColours extends GUserDefinedColours
             InputStreamReader in = new InputStreamReader(new FileInputStream(
                         file), "UTF-8");
 
-            jalview.binding.JalviewUserColours jucs = new jalview.binding.JalviewUserColours();
-            jucs = (jalview.binding.JalviewUserColours) jucs.unmarshal(in);
+              jalview.schemabinding.version2.JalviewUserColours jucs
+                  = new jalview.schemabinding.version2.JalviewUserColours();
 
-            newColours = new Color[jucs.getColourCount()];
+              org.exolab.castor.xml.Unmarshaller unmar
+                  = new org.exolab.castor.xml.Unmarshaller(jucs);
+              jucs = (jalview.schemabinding.version2.JalviewUserColours) unmar.unmarshal( in );
+
+              newColours = new Color[jucs.getColourCount()];
 
             for (int i = 0; i < 24; i++)
             {
@@ -442,9 +446,34 @@ public class UserDefinedColours extends GUserDefinedColours
         }
         catch (Exception ex)
         {
-            System.out.println("Error loading User ColourFile\n"+ex);
-        }
+            //Could be Archive Jalview format
+            try{
+              InputStreamReader in = new InputStreamReader(new FileInputStream(
+                  file), "UTF-8");
+
+              jalview.binding.JalviewUserColours jucs
+                  = new jalview.binding.JalviewUserColours();
+
+              jucs = (jalview.binding.JalviewUserColours) jucs.unmarshal(in);
 
+              newColours = new Color[jucs.getColourCount()];
+
+              for (int i = 0; i < 24; i++)
+              {
+                newColours[i] = new Color(Integer.parseInt(
+                    jucs.getColour(i).getRGB(), 16));
+              }
+              if (newColours != null)
+              {
+                ucs = new UserColourScheme(newColours);
+                ucs.setName(jucs.getSchemeName());
+              }
+            }catch(Exception ex2)
+            { ex2.printStackTrace(); }
+
+            if(newColours==null)
+              System.out.println("Error loading User ColourFile\n"+ex);
+        }
 
        return ucs;
     }
-- 
1.7.10.2