From ddf3aca722d27da4bd2c58e9f0ab0909ba9639c0 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 21 Nov 2006 12:48:29 +0000
Subject: [PATCH] Highlight feature to edit

---
 src/jalview/gui/FeatureRenderer.java |   20 +++++++++++++++-----
 src/jalview/gui/SeqPanel.java        |    4 ++--
 2 files changed, 17 insertions(+), 7 deletions(-)

diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java
index eb09af6..b584d89 100755
--- a/src/jalview/gui/FeatureRenderer.java
+++ b/src/jalview/gui/FeatureRenderer.java
@@ -423,13 +423,14 @@ public class FeatureRenderer
     public boolean createNewFeatures(SequenceI[] sequences,
                                   SequenceFeature [] features)
     {
-      return amendFeatures(sequences, features, true);
+      return amendFeatures(sequences, features, true, null);
     }
 
     int featureIndex = 0;
-    boolean amendFeatures(SequenceI[] sequences,
-                           final SequenceFeature [] features,
-                           boolean newFeatures)
+    boolean amendFeatures(final SequenceI[] sequences,
+                          final SequenceFeature[] features,
+                          boolean newFeatures,
+                          final AlignmentPanel ap)
     {
       JPanel bigPanel = new JPanel(new BorderLayout());
       final JComboBox name = new JComboBox();
@@ -567,6 +568,14 @@ public class FeatureRenderer
                   getColour(name.getSelectedItem().toString()));
               colour.setForeground(
                   getColour(name.getSelectedItem().toString()));
+
+              SearchResults highlight = new SearchResults();
+              highlight.addResult(sequences[0],
+                                  features[index].getBegin(),
+                                  features[index].getEnd());
+
+              ap.seqPanel.seqCanvas.highlightSearchResults(highlight);
+
             }
           }
         });
@@ -581,7 +590,8 @@ public class FeatureRenderer
         options = new Object[]{"OK", "Cancel"};
 
       String title = newFeatures ?  "Create New Sequence Feature(s)" :
-                                    "Amend/Delete Features";
+                                    "Amend/Delete Features for "
+                                    +sequences[0].getName();
 
       int reply = JOptionPane.showInternalOptionDialog(Desktop.desktop,
                                                    bigPanel,
diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 3349825..06aa087 100755
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -1232,7 +1232,7 @@ public class SeqPanel extends JPanel implements MouseListener,
             sequence.findPosition( findRes(evt) )
             );
 
-        if(features!=null && features.length==1)
+        if(features!=null && features.length>0)
         {
           SearchResults highlight = new SearchResults();
           highlight.addResult(sequence,
@@ -1244,7 +1244,7 @@ public class SeqPanel extends JPanel implements MouseListener,
         {
           seqCanvas.getFeatureRenderer().amendFeatures(
               new SequenceI[]
-              {sequence}, features, false);
+              {sequence}, features, false, ap);
 
           seqCanvas.highlightSearchResults(null);
         }
-- 
1.7.10.2