From dfdd9065b253d59b628b6b778105979c8e10444b Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 7 Aug 2017 11:56:46 +0100 Subject: [PATCH 1/1] JAL-2418 release notes formatting --- help/html/releases.html | 105 +++++++++++++++++++++++++++++++---------------- 1 file changed, 70 insertions(+), 35 deletions(-) diff --git a/help/html/releases.html b/help/html/releases.html index 351b055..d1a1c59 100755 --- a/help/html/releases.html +++ b/help/html/releases.html @@ -152,9 +152,10 @@ li:before { superposition.
  • - More robust per-sequence positional annotation input/output via stockholm flatfile + More robust per-sequence positional + annotation input/output via stockholm flatfile
    • - + Application @@ -265,9 +268,9 @@ li:before { restore 2.10.2 mode
  • - Fixed off-by-one bug that affected scaling - of branch lengths for trees computed using Sequence - Feature Similarity. + Fixed off-by-one bug that affected + scaling of branch lengths for trees computed using + Sequence Feature Similarity.
  • Reopening Colour by annotation dialog @@ -381,7 +384,8 @@ li:before { overview when features overlaid on alignment
  • - Minimum size set for Jalview windows so widgets don't permanently disappear + Minimum size set for Jalview windows so + widgets don't permanently disappear
  • Cannot select or filter quantitative @@ -389,9 +393,13 @@ li:before { T-Coffee column reliability scores)
  • - Gap colours in user-defined colourschemes are not shown + Gap colours in user-defined colourschemes + are not shown +
    • +
  • + Exception thrown if trying to create a + sequence feature on gaps only
    • -
  • Exception thrown if trying to create a sequence feature on gaps only
  • Sort by features includes features to right of selected region when gaps present on right-hand @@ -407,30 +415,40 @@ li:before { exporting tree calculated in Jalview
  • - Per-sequence RNA secondary structures added after a sequence was imported are not written to Stockholm File + Per-sequence RNA secondary structures + added after a sequence was imported are not written to + Stockholm File
  • - WUSS notation for simple pseudoknots lost when importing RNA secondary structure via Stockholm + WUSS notation for simple pseudoknots lost + when importing RNA secondary structure via Stockholm
  • - Secondary structure arrows for [] and {} not shown in correct direction for simple pseudoknots + Secondary structure arrows for [] and {} + not shown in correct direction for simple pseudoknots
  • - Hiding sequences at bottom of alignment and then revealing them reorders sequences on the alignment -
  • - Group panel in sequence feature settings doesn't update to reflect available set of groups after interactively adding or modifying features + Hiding sequences at bottom of alignment + and then revealing them reorders sequences on the + alignment +
    • +
  • + Group panel in sequence feature settings + doesn't update to reflect available set of groups after + interactively adding or modifying features
  • - Sequence Database chooser unusable on Linux + Sequence Database chooser unusable on + Linux
  • - +
  • - +
  • - +
    • Documentation @@ -439,15 +457,25 @@ li:before { Release notes reformatted for readibility with the built-in Java help viewer -
  • Find documentation updated with 'search sequence description' option
    • +
  • + Find documentation updated with 'search + sequence description' option +
    • Application +
    -- 1.7.10.2