From e202d4b4d2c9a8b535f4c117d76110d593fa450e Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 9 May 2017 18:18:27 +0100 Subject: [PATCH] =?utf8?q?JAL-2507=20spit=20out=20tests=20for=20=E2=80=98{=E2?= =?utf8?q?=80=98=20WUSS=20io=20from=20=E2=80=98[=E2=80=98=20WUSS=20io=20(whi?= =?utf8?q?ch=20may=20be=20causing=20problems=20via=20JAL-1863)?= MIME-Version: 1.0 Content-Type: text/plain; charset=utf8 Content-Transfer-Encoding: 8bit --- test/jalview/io/StockholmFileTest.java | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/test/jalview/io/StockholmFileTest.java b/test/jalview/io/StockholmFileTest.java index f6b39af..19df525 100644 --- a/test/jalview/io/StockholmFileTest.java +++ b/test/jalview/io/StockholmFileTest.java @@ -444,9 +444,13 @@ public class StockholmFileTest + "(|(|(|(|, .|, .|, .|, .|)|)|)|)|\t0.0\nROWPROPERTIES\t" + "secondary structure\tscaletofit=true\tshowalllabs=true\tcentrelabs=false"; + String annFileCurlyWuss = "JALVIEW_ANNOTATION\n# Created: Thu May 04 11:16:52 BST 2017\n\n" + + "SEQUENCE_REF\tDm\nNO_GRAPH\tsecondary structure\tsecondary structure\t" + + "(|(|(|(||{|{||{|{||)|)|)|)||}|}|}|}|\t0.0\nROWPROPERTIES\t" + + "secondary structure\tscaletofit=true\tshowalllabs=true\tcentrelabs=false"; String annFileFullWuss = "JALVIEW_ANNOTATION\n# Created: Thu May 04 11:16:52 BST 2017\n\n" + "SEQUENCE_REF\tDm\nNO_GRAPH\tsecondary structure\tsecondary structure\t" - + "(|(|(|(||{|{||[|[||)|)|)|)||}|}|]|]\t0.0\nROWPROPERTIES\t" + + "(|(|(|(||{|{||[|[||)|)|)|)||}|}|]|]|\t0.0\nROWPROPERTIES\t" + "secondary structure\tscaletofit=true\tshowalllabs=true\tcentrelabs=false"; @Test(groups = { "Functional" }) @@ -456,6 +460,12 @@ public class StockholmFileTest } @Test(groups = { "Functional" }) + public void curlyWUSSsecondaryStructureForRNASequence() throws Exception + { + roundTripSSForRNA(aliFile, annFileCurlyWuss); + } + + @Test(groups = { "Functional" }) public void fullWUSSsecondaryStructureForRNASequence() throws Exception { roundTripSSForRNA(aliFile, annFileFullWuss); -- 1.7.10.2