From e207348a53bcdda0dac93c574bf3ca1be1241929 Mon Sep 17 00:00:00 2001
From: gmungoc <g.m.carstairs@dundee.ac.uk>
Date: Tue, 4 Dec 2018 13:22:55 +0000
Subject: [PATCH] JAL-3032 set radio buttons transparent

---
 src/jalview/gui/CalculationChooser.java  |    5 ++++-
 src/jalview/gui/FeatureTypeSettings.java |    5 +++++
 2 files changed, 9 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/CalculationChooser.java b/src/jalview/gui/CalculationChooser.java
index 183419e..a79169a 100644
--- a/src/jalview/gui/CalculationChooser.java
+++ b/src/jalview/gui/CalculationChooser.java
@@ -155,12 +155,15 @@ public class CalculationChooser extends JPanel
     pca = new JRadioButton(
             MessageManager.getString("label.principal_component_analysis"));
     pca.setOpaque(false);
+    
     neighbourJoining = new JRadioButton(
             MessageManager.getString("label.tree_calc_nj"));
     neighbourJoining.setSelected(true);
+    neighbourJoining.setOpaque(false);
+
     averageDistance = new JRadioButton(
             MessageManager.getString("label.tree_calc_av"));
-    neighbourJoining.setOpaque(false);
+    averageDistance.setOpaque(false);
 
     JPanel calcChoicePanel = new JPanel(new FlowLayout(FlowLayout.LEFT));
     calcChoicePanel.setOpaque(false);
diff --git a/src/jalview/gui/FeatureTypeSettings.java b/src/jalview/gui/FeatureTypeSettings.java
index f59aa59..1ba24b5 100644
--- a/src/jalview/gui/FeatureTypeSettings.java
+++ b/src/jalview/gui/FeatureTypeSettings.java
@@ -485,6 +485,7 @@ public class FeatureTypeSettings extends JalviewDialog
     graduatedColour = new JRadioButton(
             MessageManager.getString("label.by_range_of") + COLON);
     graduatedColour.setPreferredSize(new Dimension(RADIO_WIDTH, 20));
+    graduatedColour.setOpaque(false);
     graduatedColour.addItemListener(new ItemListener()
     {
       @Override
@@ -730,6 +731,7 @@ public class FeatureTypeSettings extends JalviewDialog
     simpleColour = new JRadioButton(
             MessageManager.getString("label.simple_colour"));
     simpleColour.setPreferredSize(new Dimension(RADIO_WIDTH, 20));
+    simpleColour.setOpaque(false);
     simpleColour.addItemListener(new ItemListener()
     {
       @Override
@@ -781,6 +783,7 @@ public class FeatureTypeSettings extends JalviewDialog
     byCategory = new JRadioButton(
             MessageManager.getString("label.by_text_of") + COLON);
     byCategory.setPreferredSize(new Dimension(RADIO_WIDTH, 20));
+    byCategory.setOpaque(false);
     byCategory.addItemListener(new ItemListener()
     {
       @Override
@@ -1192,6 +1195,8 @@ public class FeatureTypeSettings extends JalviewDialog
     andOrPanel.setBackground(Color.white);
     andFilters = new JRadioButton(MessageManager.getString("label.and"));
     orFilters = new JRadioButton(MessageManager.getString("label.or"));
+    andFilters.setOpaque(false);
+    orFilters.setOpaque(false);
     ActionListener actionListener = new ActionListener()
     {
       @Override
-- 
1.7.10.2