From e2d482716f329dc107c79421495718d25cd7070e Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 18 Nov 2004 18:41:36 +0000
Subject: [PATCH] setcolour in seqpanel now needs to know about conservation

---
 src/jalview/gui/UserDefinedColours.java |    4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/UserDefinedColours.java b/src/jalview/gui/UserDefinedColours.java
index 0c181b0..c78c093 100755
--- a/src/jalview/gui/UserDefinedColours.java
+++ b/src/jalview/gui/UserDefinedColours.java
@@ -89,7 +89,7 @@ public class UserDefinedColours extends GUserDefinedColours implements ChangeLis
 
     ucs.setThreshold(0);
     ucs.setColourScheme( newColours );
-    seqPanel.setColourScheme( ucs );
+    seqPanel.setColourScheme( ucs, false );
   }
 
   protected void loadbutton_actionPerformed(ActionEvent e)
@@ -157,7 +157,7 @@ public class UserDefinedColours extends GUserDefinedColours implements ChangeLis
     }
 
     ucs.setColourScheme( newColours );
-    seqPanel.setColourScheme( ucs );
+    seqPanel.setColourScheme( ucs, false );
 
   }
 
-- 
1.7.10.2