From e4080c73e444d415208049ff38f3b26041b071bf Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 12 Jul 2016 16:37:19 +0100 Subject: [PATCH] JAL-2110 scalability todo --- src/jalview/analysis/AlignmentUtils.java | 1 + 1 file changed, 1 insertion(+) diff --git a/src/jalview/analysis/AlignmentUtils.java b/src/jalview/analysis/AlignmentUtils.java index 37f225c..e2f6749 100644 --- a/src/jalview/analysis/AlignmentUtils.java +++ b/src/jalview/analysis/AlignmentUtils.java @@ -2552,6 +2552,7 @@ public class AlignmentUtils int width = columnMap.size(); char gap = unaligned.getGapCharacter(); int realignedCount = 0; + // TODO: verify this loop scales sensibly for very wide/high alignments for (SequenceI seq : unaligned.getSequences()) { -- 1.7.10.2