From e573bf375782b0dbdfacee15f6477d9630a234ee Mon Sep 17 00:00:00 2001 From: jprocter Date: Tue, 19 Jun 2012 17:28:50 +0100 Subject: [PATCH] JAL-975 - doh! valid result if width matches *ungapped* input data --- src/jalview/ws/jws2/AAConsClient.java | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/src/jalview/ws/jws2/AAConsClient.java b/src/jalview/ws/jws2/AAConsClient.java index c76ea1c..f6c3fcf 100644 --- a/src/jalview/ws/jws2/AAConsClient.java +++ b/src/jalview/ws/jws2/AAConsClient.java @@ -75,7 +75,7 @@ public class AAConsClient extends JabawsAlignCalcWorker // simple annotation row annotation = alignViewport.getAlignment().findOrCreateAnnotation(scr.getMethod(), true, null, null); Annotation[] elm = new Annotation[alWidth]; - if (alWidth == scr.getScores().size()) + if (alWidth == gapMap.length) // scr.getScores().size()) { Iterator vals = scr.getScores().iterator(); float m = 0f, x = 0f; -- 1.7.10.2