From e69437d3308e865d0d651461d44dfa63cffab746 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 10 Nov 2005 11:08:01 +0000
Subject: [PATCH] Set PDBViewer

---
 src/jalview/gui/SeqCanvas.java |   19 ++++++++++++++++++-
 1 file changed, 18 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/SeqCanvas.java b/src/jalview/gui/SeqCanvas.java
index d122364..c3972ee 100755
--- a/src/jalview/gui/SeqCanvas.java
+++ b/src/jalview/gui/SeqCanvas.java
@@ -65,11 +65,22 @@ public class SeqCanvas extends JComponent
         setBackground(Color.white);
     }
 
+    MCview.PDBCanvas pdbViewer;
+    public SequenceRenderer getSequenceRenderer()
+    {
+      return sr;
+    }
+
     public FeatureRenderer getFeatureRenderer()
     {
       return fr;
     }
 
+    public void setPDBViewer(MCview.PDBCanvas pc)
+    {
+      pdbViewer = pc;
+    }
+
     /**
      * DOCUMENT ME!
      *
@@ -272,7 +283,6 @@ public class SeqCanvas extends JComponent
         {
             g.drawImage(img, 0, 0, this);
             fastPaint = false;
-
             return;
         }
 
@@ -310,6 +320,12 @@ public class SeqCanvas extends JComponent
         }
 
         g.drawImage(img, 0, 0, this);
+
+        if (pdbViewer != null)
+        {
+          pdbViewer.updateSeqColours();
+        }
+
     }
 
     /**
@@ -516,6 +532,7 @@ public class SeqCanvas extends JComponent
       repaint();
     }
 
+
     synchronized public void drawPanel(Graphics g1, int x1, int x2, int y1,
         int y2, int startx, int starty, int offset)
     {
-- 
1.7.10.2