From e71a5d2b1e0025a8e23eb637f12f6f5665c91feb Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 8 Mar 2005 14:34:10 +0000
Subject: [PATCH] only set graphics black once at beginning of text

---
 src/jalview/gui/SequenceRenderer.java |   18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/src/jalview/gui/SequenceRenderer.java b/src/jalview/gui/SequenceRenderer.java
index 69db54d..5b5a392 100755
--- a/src/jalview/gui/SequenceRenderer.java
+++ b/src/jalview/gui/SequenceRenderer.java
@@ -98,17 +98,19 @@ public class SequenceRenderer implements RendererI
     int charOffset=0;
     char s;
     // Need to find the sequence position here.
+
+    graphics.setColor(Color.black);
+    String sequence  = seq.getSequence();
     for (int i = start; i <= end; i++)
     {
-        if(i<seq.getLength())
-          s = seq.getSequence().charAt(i);
+        if(i<sequence.length())
+          s = sequence.charAt(i);
         else
           s = ' ';
 
         if(!renderGaps && jalview.util.Comparison.isGap(s))
           continue;
 
-        graphics.setColor(Color.black);
 
         if (inCurrentSequenceGroup(i))
         {
@@ -133,9 +135,11 @@ public class SequenceRenderer implements RendererI
            }
         }
 
-      charOffset =  (width - fm.charWidth(s))/2;
-      graphics.drawString(String.valueOf(s), charOffset + x1 + width * (i - start), y1 + height - pady);
-    }
+          charOffset =  (width - fm.charWidth(s))/2;
+          graphics.drawString(String.valueOf(s),
+                              charOffset + x1 + width * (i - start),
+                              y1 + height - pady);
+        }
 
 
   }
@@ -170,7 +174,7 @@ public class SequenceRenderer implements RendererI
        if(i<seq.getLength())
           s = seq.getSequence().charAt(i);
 
-      charOffset =  (width - fm.charWidth(s))/2;
+     charOffset =  (width - fm.charWidth(s))/2;
       graphics.drawString(String.valueOf(s), charOffset + x1 + width * (i - start), y1 + height - pady);
     }
   }
-- 
1.7.10.2