From e8bf50102d1e937c715bf15046ae5076343313c0 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Thu, 18 Aug 2005 09:20:07 +0000 Subject: [PATCH] Use aa index for aboveThreshold as well as colour index --- src/jalview/schemes/ResidueColourScheme.java | 6 ++++-- 1 file changed, 4 insertions(+), 2 deletions(-) diff --git a/src/jalview/schemes/ResidueColourScheme.java b/src/jalview/schemes/ResidueColourScheme.java index 71f12c1..785d22d 100755 --- a/src/jalview/schemes/ResidueColourScheme.java +++ b/src/jalview/schemes/ResidueColourScheme.java @@ -94,9 +94,11 @@ public class ResidueColourScheme implements ColourSchemeI */ public Color findColour(String s, int j) { - if ((threshold == 0) || aboveThreshold(s, j)) + int index = ((Integer) (ResidueProperties.aaHash.get(s))).intValue(); + + if ((threshold == 0) || aboveThreshold(ResidueProperties.aa[index], j)) { - return colors[((Integer) (ResidueProperties.aaHash.get(s))).intValue()]; + return colors[index]; } else { -- 1.7.10.2