From eaace91e0394510ab4053b0884804cd2200c9ef6 Mon Sep 17 00:00:00 2001
From: soares <bsoares@dundee.ac.uk>
Date: Fri, 20 Dec 2019 14:11:00 +0000
Subject: [PATCH] JAL-3210 Added a flag to skip transpile errors, now like in
 Eclipse IDE. Will want this to be false in production

---
 build.gradle      |    7 ++++++-
 gradle.properties |    1 +
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/build.gradle b/build.gradle
index c451100..b461247 100644
--- a/build.gradle
+++ b/build.gradle
@@ -1851,7 +1851,12 @@ DEBUG: ${eclipseDebug}
     if (stdout.toString().contains("Error processing ")) {
       // j2s did not complete transpile
       //throw new TaskExecutionException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
-      throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      if (jalviewjs_ignore_transpile_errors.equals("true")) {
+        println("IGNORING TRANSPILE ERRORS")
+        println("See eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      } else {
+        throw new GradleException("Error during transpilation:\n${stderr}\nSee eclipse transpile log file '${jalviewDir}/${jalviewjsBuildDir}/${jalviewjs_j2s_transpile_stdout}'")
+      }
     }
   }
 
diff --git a/gradle.properties b/gradle.properties
index b64eb11..fda866e 100644
--- a/gradle.properties
+++ b/gradle.properties
@@ -178,6 +178,7 @@ jalviewjs_core_name = _jalview
 jalviewjs_name = JalviewJS
 jalviewjs_core_key = core
 #jalviewjs_core_key = preloadCore
+jalviewjs_ignore_transpile_errors = true
 
 j2s.compiler.status = enable
 #j2s.site.directory = null ## site defined from buildDir+'/jalviewjs/'+jalviewjs_site_dir
-- 
1.7.10.2