From eac90472b9bedf5a147bf33c635492cdefc4ef23 Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 14 Dec 2004 11:19:46 +0000
Subject: [PATCH] Copy, move and delete now done via Popup menu

---
 src/jalview/gui/AlignFrame.java |   38 ++++----------------------------------
 1 file changed, 4 insertions(+), 34 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index ab5fb17..9d0f60c 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -189,6 +189,10 @@ public class AlignFrame extends GAlignFrame
      alignPanel.RefreshPanels();
   }
 
+  protected void modifyAlignmentMenuItem_actionPerformed(ActionEvent e)
+  {
+    viewport.groupDefiningMode = !modifyAlignmentMenuItem.isSelected();
+  }
 
 
   public void groupsMenuItem_actionPerformed(ActionEvent e)
@@ -232,40 +236,6 @@ public class AlignFrame extends GAlignFrame
     PaintRefresher.Refresh(null);
   }
 
-  public void deleteSelectedMenuItem_actionPerformed(ActionEvent e)
-  {
-    addHistoryItem("delete selection");
-
-    for (int i=0;i < viewport.getSelection().size(); i++)
-            viewport.getAlignment().deleteSequence(viewport.getSelection().sequenceAt(i));
-
-    viewport.getSelection().clear();
-    viewport.resetSeqLimits(alignPanel.seqPanel.seqCanvas.getHeight());
-    alignPanel.RefreshPanels();
-  }
-
-  public void moveSelectedMenuItem_actionPerformed(ActionEvent e)
-  {
-    copySelectedMenuItem_actionPerformed(null);
-    deleteSelectedMenuItem_actionPerformed(null);
-    alignPanel.repaint();
-  }
-
-  public void copySelectedMenuItem_actionPerformed(ActionEvent e)
-  {
-    if(viewport.getSelection().size()==0)
-      return;
-
-   SequenceI[] s = new Sequence[viewport.getSelection().size()];
-   for (int i=0; i < viewport.getSelection().size(); i++) {
-     s[i] = new Sequence(viewport.getSelection().sequenceAt(i));
-    }
-    AlignFrame af = new AlignFrame(new Alignment(s));
-    int newHeight = s.length * af.viewport.getCharHeight() + 200;
-    if(newHeight>500)
-      newHeight=500;
-    Desktop.addInternalFrame(af, "Copied sequences", 700,newHeight);
-  }
 
   public void deselectAllColumnsMenuItem_actionPerformed(ActionEvent e)
   {
-- 
1.7.10.2