From eb690a1091b33e9fe1ea190be5c1781e00c6bb3e Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 8 Mar 2005 14:32:21 +0000
Subject: [PATCH] dont color gaps in sequence features

---
 src/jalview/gui/FeatureRenderer.java |    6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/src/jalview/gui/FeatureRenderer.java b/src/jalview/gui/FeatureRenderer.java
index 59f446e..fc31fdf 100755
--- a/src/jalview/gui/FeatureRenderer.java
+++ b/src/jalview/gui/FeatureRenderer.java
@@ -55,11 +55,15 @@ public class FeatureRenderer implements RendererI
         {
           for (int i = fstart; i <= fend; i++)
           {
+            char s = seq.getSequence().charAt(i);
+            if( jalview.util.Comparison.isGap(s) )
+              continue;
+
             g.setColor(Color.blue);
             g.fillRect( (i-start) * width, y1, width, height);
 
             g.setColor(Color.white);
-            char s = seq.getSequence().charAt(i);
+
             FontMetrics fm = g.getFontMetrics();
             int charOffset = (width - fm.charWidth(s)) / 2;
             int pady = height / 5;
-- 
1.7.10.2