From edad4bc11866e704a9c731a00dbb0123136193b4 Mon Sep 17 00:00:00 2001
From: osboxes <osboxes@osboxes>
Date: Tue, 29 Aug 2017 07:00:54 -0400
Subject: [PATCH] JAL-2629 fix incorrect mapping between HMM and columns after
 move

---
 src/jalview/datamodel/HiddenMarkovModel.java |    3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/src/jalview/datamodel/HiddenMarkovModel.java b/src/jalview/datamodel/HiddenMarkovModel.java
index a837b4f..49c29d1 100644
--- a/src/jalview/datamodel/HiddenMarkovModel.java
+++ b/src/jalview/datamodel/HiddenMarkovModel.java
@@ -748,8 +748,6 @@ public class HiddenMarkovModel
    */
   public void setAlignmentColumn(int nodeIndex, int column)
   {
-    int currentCol = getNodeAlignmentColumn(nodeIndex);
-    nodeLookup.remove(currentCol);
     nodes.get(nodeIndex).setAlignmentColumn(column);
     nodeLookup.put(column, nodeIndex);
   }
@@ -1029,5 +1027,6 @@ public class HiddenMarkovModel
     symbolIndexLookup.put(c, i);
   }
 
+
 }
 
-- 
1.7.10.2