From ee436fa42c0ac156c654f5a4967faf39ed2dcddc Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 10 Feb 2005 17:53:20 +0000
Subject: [PATCH] trimmed down

---
 src/jalview/gui/AlignViewport.java |   32 +-------------------------------
 1 file changed, 1 insertion(+), 31 deletions(-)

diff --git a/src/jalview/gui/AlignViewport.java b/src/jalview/gui/AlignViewport.java
index 7352495..3620bc0 100755
--- a/src/jalview/gui/AlignViewport.java
+++ b/src/jalview/gui/AlignViewport.java
@@ -41,8 +41,6 @@ public class AlignViewport
   Selection       sel    = new Selection(this);
   ColumnSelection colSel = new ColumnSelection();
 
-  OutputGenerator og;
-
   String visibleConsensus;
 
   int threshold;
@@ -50,10 +48,6 @@ public class AlignViewport
 
   NJTree currentTree = null;
 
-  int window   = 50;
-  int baseline = 30;
-
-  Vector kmers;
 
   public AlignViewport(AlignmentI da,
                        boolean showScores,
@@ -325,9 +319,7 @@ public class AlignViewport
   public ColumnSelection getColumnSelection() {
     return colSel;
   }
-  public OutputGenerator getOutputGenerator() {
-    return og;
-  }
+
   public void resetSeqLimits(int height) {
     setStartSeq(0);
     setEndSeq(height/getCharHeight());
@@ -346,27 +338,5 @@ public class AlignViewport
     public RendererI getRenderer() {
 	return renderer;
     }
-    public int getPIDWindow() {
-	return window;
-    }
-    public void setPIDWindow(int window) {
-	this.window = window;
-    }
-
-    public int getPIDBaseline() {
-	return baseline;
-    }
-    public void setPIDBaseline(int baseline) {
-	this.baseline = baseline;
-    }
-
-    public void setKmers(Vector kmers) {
-        this.kmers = kmers;
-    }
-
-    public Vector getKmers() {
-        return this.kmers;
-    }
-
 
 }
-- 
1.7.10.2