From f05332c8cc2a3a1d00a8dae38b8920ae799fb840 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Mon, 15 May 2017 17:26:53 +0100 Subject: [PATCH 1/1] JAL-2507 capitalisation for annotation lines generated from stockholm annotation --- src/jalview/io/StockholmFile.java | 8 ++++---- 1 file changed, 4 insertions(+), 4 deletions(-) diff --git a/src/jalview/io/StockholmFile.java b/src/jalview/io/StockholmFile.java index ed50db8..c2f3683 100644 --- a/src/jalview/io/StockholmFile.java +++ b/src/jalview/io/StockholmFile.java @@ -1163,10 +1163,10 @@ public class StockholmFile extends AlignFile if (typeIds == null) { typeIds = new Hashtable(); - typeIds.put("SS", "secondary structure"); - typeIds.put("SA", "surface accessibility"); + typeIds.put("SS", "Secondary Structure"); + typeIds.put("SA", "Surface Accessibility"); typeIds.put("TM", "transmembrane"); - typeIds.put("PP", "posterior probability"); + typeIds.put("PP", "Posterior Probability"); typeIds.put("LI", "ligand binding"); typeIds.put("AS", "active site"); typeIds.put("IN", "intron"); @@ -1177,7 +1177,7 @@ public class StockholmFile extends AlignFile typeIds.put("DE", "description"); typeIds.put("DR", "reference"); typeIds.put("LO", "look"); - typeIds.put("RF", "reference positions"); + typeIds.put("RF", "Reference Positions"); } } -- 1.7.10.2