From f05c81344f3bba0900c764d30df0cd2d028b8ed4 Mon Sep 17 00:00:00 2001 From: amwaterhouse Date: Tue, 10 Oct 2006 10:43:52 +0000 Subject: [PATCH 1/1] Use AAFrequency final keys --- src/jalview/appletgui/AlignViewport.java | 10 +++++----- 1 file changed, 5 insertions(+), 5 deletions(-) diff --git a/src/jalview/appletgui/AlignViewport.java b/src/jalview/appletgui/AlignViewport.java index b369b1f..1fa3e3f 100755 --- a/src/jalview/appletgui/AlignViewport.java +++ b/src/jalview/appletgui/AlignViewport.java @@ -321,12 +321,12 @@ public class AlignViewport { float value = 0; if(ignoreGapsInConsensusCalculation) - value = ((Float)hconsensus[i].get("pid_nogaps")).floatValue(); + value = ((Float)hconsensus[i].get(AAFrequency.PID_NOGAPS)).floatValue(); else - value = ((Float)hconsensus[i].get("pid_gaps")).floatValue(); + value = ((Float)hconsensus[i].get(AAFrequency.PID_GAPS)).floatValue(); - String maxRes = hconsensus[i].get("maxResidue").toString(); - String mouseOver = hconsensus[i].get("maxResidue") + " "; + String maxRes = hconsensus[i].get(AAFrequency.MAXRESIDUE).toString(); + String mouseOver = maxRes; if (maxRes.length() > 1) { mouseOver = "[" + maxRes + "] "; @@ -966,7 +966,7 @@ public class AlignViewport // be done to remove redundancy. CigarArray aligview = getViewAsCigars(selectedOnly); if (aligview!=null) { - return new AlignmentView(aligview, + return new AlignmentView(aligview, (selectedOnly && selectionGroup!=null) ? selectionGroup.getStartRes() : 0); } return null; -- 1.7.10.2