From f0ade845a8f610bc402051d617cec4cfebe9e58a Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Thu, 18 Nov 2004 18:38:30 +0000
Subject: [PATCH] allow printing and 3d viewer

---
 src/jalview/gui/AlignFrame.java |   63 +++++++++++++++++++++++++++++++++++++--
 1 file changed, 61 insertions(+), 2 deletions(-)

diff --git a/src/jalview/gui/AlignFrame.java b/src/jalview/gui/AlignFrame.java
index b504538..76c483e 100755
--- a/src/jalview/gui/AlignFrame.java
+++ b/src/jalview/gui/AlignFrame.java
@@ -16,8 +16,10 @@ import jalview.schemes.*;
 import jalview.datamodel.*;
 import jalview.analysis.*;
 import jalview.io.*;
-import java.awt.event.*;
+import MCview.*;
 import java.awt.*;
+import java.awt.event.*;
+import java.awt.print.*;
 import javax.swing.*;
 import java.util.*;
 
@@ -72,11 +74,38 @@ public class AlignFrame extends GAlignFrame
     htmlOutput = null;
   }
 
-  public void saveAsPostscriptMenuItem_actionPerformed(ActionEvent e)
+  public void printMenuItem_actionPerformed(ActionEvent e)
   {
+    //Putting in a thread avoids Swing painting problems
+    PrintThread thread = new PrintThread();
+    thread.start();
+  }
+
+  class PrintThread extends Thread
+  {
+    public void run()
+    {
+      PrinterJob printJob = PrinterJob.getPrinterJob();
+      PageFormat pf = printJob.pageDialog(printJob.defaultPage());
+      printJob.setPrintable(alignPanel, pf);
+      if (printJob.printDialog())
+      {
+        try
+        {
+          printJob.print();
+        }
+        catch (Exception PrintException)
+        {
+          PrintException.printStackTrace();
+        }
+      }
+    }
 
   }
 
+
+
+
   public void closeMenuItem_actionPerformed(ActionEvent e)
   {
     try{
@@ -671,4 +700,34 @@ public class AlignFrame extends GAlignFrame
                                   "Web service", JOptionPane.INFORMATION_MESSAGE);
   }
 
+  public void pdbTest_actionPerformed(ActionEvent e)
+  {
+   String reply = JOptionPane.showInputDialog(this, "Enter pdb code", "PDB test viewer", JOptionPane.QUESTION_MESSAGE);
+
+   String url = "http://www.ebi.ac.uk/cgi-bin/pdbfetch?id=1a4u";
+   if (reply.length()>1)
+     url = "http://www.ebi.ac.uk/cgi-bin/pdbfetch?id="+reply;
+
+   try
+   {
+     PDBfile pdb = new PDBfile(url,
+                               "URL");
+    Sequence seq = (Sequence)viewport.getAlignment().getSequenceAt(0);
+    seq.setPDBfile(pdb);
+     ( (PDBChain) pdb.chains.elementAt(seq.maxchain)).isVisible = true;
+     ( (PDBChain) pdb.chains.elementAt(seq.maxchain)).sequence = seq;
+  // ( (PDBChain) pdb.chains.elementAt(seq.maxchain)).colourBySequence();
+
+     rotCanvas rc = new rotCanvas(pdb);
+     JInternalFrame frame = new JInternalFrame();
+     frame.setContentPane(rc);
+     Desktop.addInternalFrame(frame, url, 400,400);
+   }
+   catch (Exception ex)
+   {
+     ex.printStackTrace();
+   }
+
+  }
+
 }
-- 
1.7.10.2