From f49b3b02c911ef724b5e89df7008506bed9b498c Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Thu, 19 Feb 2015 15:23:47 +0000 Subject: [PATCH] JAL-653 refactor sequence interface to separate concrete sequence data methods from sequence metadata methods & containers --- src/jalview/datamodel/Sequence.java | 2 +- src/jalview/datamodel/SequenceI.java | 5 +++-- 2 files changed, 4 insertions(+), 3 deletions(-) diff --git a/src/jalview/datamodel/Sequence.java b/src/jalview/datamodel/Sequence.java index cab1ac7..257c894 100755 --- a/src/jalview/datamodel/Sequence.java +++ b/src/jalview/datamodel/Sequence.java @@ -37,7 +37,7 @@ import jalview.util.StringUtils; * @author $author$ * @version $Revision$ */ -public class Sequence implements SequenceI +public class Sequence extends ASequence implements SequenceI { SequenceI datasetSequence; diff --git a/src/jalview/datamodel/SequenceI.java b/src/jalview/datamodel/SequenceI.java index 38ae372..f69c8b6 100755 --- a/src/jalview/datamodel/SequenceI.java +++ b/src/jalview/datamodel/SequenceI.java @@ -26,12 +26,13 @@ import java.util.Vector; import fr.orsay.lri.varna.models.rna.RNA; /** - * DOCUMENT ME! + * Methods for manipulating a sequence, its metadata and related annotation in + * an alignment or dataset. * * @author $author$ * @version $Revision$ */ -public interface SequenceI +public interface SequenceI extends ASequenceI { /** * Set the display name for the sequence -- 1.7.10.2