From f51ad53a1437086e6deea02e4f8930078b92bfcc Mon Sep 17 00:00:00 2001
From: jprocter <jprocter@compbio.dundee.ac.uk>
Date: Fri, 28 Oct 2011 17:23:22 +0100
Subject: [PATCH] JAL-885 - catch race condition when rna structure width is
 different to alignment annotation width (may be a finesse
 here)

---
 src/jalview/renderer/AnnotationRenderer.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/renderer/AnnotationRenderer.java b/src/jalview/renderer/AnnotationRenderer.java
index 47e2cb7..0d7d4ca 100644
--- a/src/jalview/renderer/AnnotationRenderer.java
+++ b/src/jalview/renderer/AnnotationRenderer.java
@@ -177,7 +177,7 @@ public class AnnotationRenderer
         // to
         // be stored
         if (aa.groupRef == null && aa.sequenceRef == null
-                && av_renderProfile)
+                && av_renderProfile && hStrucConsensus!=null && hStrucConsensus.length>column)
         {
           return StructureFrequency.extractProfile(hStrucConsensus[column],
                   av_ignoreGapsConsensus);
-- 
1.7.10.2