From f602f5590ae442664ecd8024087a62f71f00d82c Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Mon, 21 Mar 2005 18:47:48 +0000
Subject: [PATCH] fix select group bug

---
 src/jalview/gui/SeqPanel.java |   12 ++++--------
 1 file changed, 4 insertions(+), 8 deletions(-)

diff --git a/src/jalview/gui/SeqPanel.java b/src/jalview/gui/SeqPanel.java
index 55bec56..8e7141b 100755
--- a/src/jalview/gui/SeqPanel.java
+++ b/src/jalview/gui/SeqPanel.java
@@ -397,7 +397,10 @@ public class SeqPanel extends JPanel
     if(stretchGroup == null)
      {
        stretchGroup = av.alignment.findGroup( sequence );
-       av.setSelectionGroup( stretchGroup );
+       if(res>stretchGroup.getStartRes() && res<stretchGroup.getEndRes())
+         av.setSelectionGroup(stretchGroup);
+       else
+         stretchGroup = null;
      }
 
     else if(!stretchGroup.sequences.contains(sequence)
@@ -486,13 +489,6 @@ public class SeqPanel extends JPanel
     {
       ConservationColourScheme ccs = (ConservationColourScheme)stretchGroup.cs;
 
-      Conservation c = new Conservation("Group",
-                                        ResidueProperties.propHash, 3, stretchGroup.sequences, 0,
-                                        av.alignment.getWidth() );
-
-       c.calculate();
-       c.verdict(false, 100);
-       ccs = new ConservationColourScheme(c, ccs.cs);
 
        stretchGroup.cs = ccs;
 
-- 
1.7.10.2