From f65ab8b9feb5f7f36084e254a1a3cb080cd8811b Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Wed, 15 Dec 2004 17:19:15 +0000
Subject: [PATCH] If selection altered, update RubberbandGroup

---
 src/jalview/gui/Selection.java |   37 +++++++++++++++++++++++++------------
 1 file changed, 25 insertions(+), 12 deletions(-)

diff --git a/src/jalview/gui/Selection.java b/src/jalview/gui/Selection.java
index 6f73f5d..0ac9389 100755
--- a/src/jalview/gui/Selection.java
+++ b/src/jalview/gui/Selection.java
@@ -4,18 +4,29 @@ import jalview.datamodel.*;
 
 import java.util.*;
 
-public class Selection {
+public class Selection
+{
+
   Vector selected = new Vector();
+  AlignViewport av;
 
-  public void addElement(DrawableSequence seq) {
-    addElement((SequenceI)seq);
+  public Selection(AlignViewport av)
+  {
+    this.av = av;
   }
+
   public void addElement(SequenceI seq) {
     selected.addElement(seq);
-  }
+    SequenceGroup sg = av.getRubberbandGroup();
+    if(sg==null)
+    {
+      sg = new SequenceGroup();
+      sg.setEndRes(av.alignment.getWidth()-1);
+      av.setRubberbandGroup(sg);
+    }
+
+    sg.addSequence(seq);
 
-  public void removeElement(DrawableSequence seq) {
-    removeElement((SequenceI)seq);
   }
 
   public void clear() {
@@ -23,16 +34,18 @@ public class Selection {
   }
 
   public void removeElement(SequenceI seq) {
-    if (selected.contains(seq)) {
+    if (selected.contains(seq))
       selected.removeElement(seq);
-    } else {
+    else
       System.err.println("WARNING: Tried to remove SequenceI NOT in Selection");
-    }
-  }
 
-  public boolean contains(DrawableSequence seq) {
-    return contains((SequenceI)seq);
+    SequenceGroup sg = av.getRubberbandGroup();
+    if (sg != null)
+      sg.deleteSequence(seq);
+
+
   }
+
   public boolean contains(SequenceI seq) {
     return selected.contains(seq);
   }
-- 
1.7.10.2