From f7c72258edbc607b5d326c7f80b8d76cde51b17b Mon Sep 17 00:00:00 2001
From: amwaterhouse <Andrew Waterhouse>
Date: Tue, 14 Dec 2004 11:19:04 +0000
Subject: [PATCH] AddOrRemove function added, start and end res fixed

---
 src/jalview/datamodel/SequenceGroup.java |   18 +++++++++++++++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/src/jalview/datamodel/SequenceGroup.java b/src/jalview/datamodel/SequenceGroup.java
index 6bccec3..d8c5c93 100755
--- a/src/jalview/datamodel/SequenceGroup.java
+++ b/src/jalview/datamodel/SequenceGroup.java
@@ -19,8 +19,8 @@ public class SequenceGroup
   public Vector sequences = new Vector();
   int width = -1;
   public ColourSchemeI cs;
-  int startRes = 20;
-  int endRes = 35;
+  int startRes = 0;
+  int endRes = 0;
 
   public SequenceGroup()
   {
@@ -37,7 +37,9 @@ public class SequenceGroup
                        boolean isSelected,
                        boolean displayBoxes, boolean displayText,
                        boolean colourText,
-                       boolean display)
+                       boolean display,
+                       int start,
+                       int end)
   {
 
     this.groupName = groupName;
@@ -47,6 +49,8 @@ public class SequenceGroup
     this.colourText = colourText;
     this.display = display;
     this.cs = scheme;
+    startRes = start;
+    endRes = end;
   }
 
   public String getName()
@@ -75,6 +79,14 @@ public class SequenceGroup
       sequences.addElement(s);
   }
 
+  public void addOrRemove(SequenceI s)
+  {
+    if(sequences.contains(s))
+      deleteSequence(s);
+    else
+      addSequence(s);
+  }
+
   public void deleteSequence(SequenceI s)
   {
     sequences.removeElement(s);
-- 
1.7.10.2