From fb131e37e8cd5e385c072c9c1663b7caecff8527 Mon Sep 17 00:00:00 2001 From: gmungoc Date: Thu, 14 Nov 2019 16:13:31 +0000 Subject: [PATCH] JAL-3081 unit tests for 'custom' (no) sort, sort autocalc only --- test/jalview/analysis/AnnotationSorterTest.java | 74 +++++++++++++++++++++++ 1 file changed, 74 insertions(+) diff --git a/test/jalview/analysis/AnnotationSorterTest.java b/test/jalview/analysis/AnnotationSorterTest.java index 7153f67..3277a16 100644 --- a/test/jalview/analysis/AnnotationSorterTest.java +++ b/test/jalview/analysis/AnnotationSorterTest.java @@ -410,4 +410,78 @@ public class AnnotationSorterTest + " sequences and " + numAnns + " annotations took " + elapsed + "ms"); } + + /** + * Test that sort does nothing if sort order is CUSTOM (manually ordered + * annotations) + */ + @Test(groups = { "Functional" }) + public void testSort_custom() + { + // @formatter:off + anns[0].sequenceRef = al.getSequenceAt(1); anns[0].label = "label0"; + anns[1].sequenceRef = al.getSequenceAt(3); anns[1].label = "structure"; + anns[2].sequenceRef = al.getSequenceAt(3); anns[2].label = "iron"; + anns[3].autoCalculated = true; anns[3].label = "Quality"; + anns[4].autoCalculated = true; anns[4].label = "Consensus"; + anns[5].sequenceRef = al.getSequenceAt(0); anns[5].label = "label5"; + anns[6].sequenceRef = al.getSequenceAt(3); anns[6].label = "IRP"; + // @formatter:on + + /* + * showAutocalcAbove=true ignored if CUSTOM ordering + */ + AnnotationSorter testee = new AnnotationSorter(al, true, false); + testee.sort(anns, SequenceAnnotationOrder.CUSTOM); + assertEquals("label0", anns[0].label); // all unchanged + assertEquals("structure", anns[1].label); + assertEquals("iron", anns[2].label); + assertEquals("Quality", anns[3].label); + assertEquals("Consensus", anns[4].label); + assertEquals("label5", anns[5].label); + assertEquals("IRP", anns[6].label); + } + + /** + * Test of sorting only autocalculated annotations + */ + @Test(groups = { "Functional" }) + public void testSort_autocalcOnly() + { + // @formatter:off + anns[0].sequenceRef = al.getSequenceAt(1); anns[0].label = "label0"; + anns[1].sequenceRef = al.getSequenceAt(3); anns[1].label = "structure"; + anns[2].sequenceRef = al.getSequenceAt(3); anns[2].label = "iron"; + anns[3].autoCalculated = true; anns[3].label = "Quality"; + anns[4].autoCalculated = true; anns[4].label = "Consensus"; + anns[5].sequenceRef = al.getSequenceAt(0); anns[5].label = "label5"; + anns[6].sequenceRef = al.getSequenceAt(3); anns[6].label = "IRP"; + // @formatter:on + + /* + * showAutocalcAbove=true, autocalcOnly=true + */ + AnnotationSorter testee = new AnnotationSorter(al, true, true); + testee.sort(anns, SequenceAnnotationOrder.LABEL_AND_SEQUENCE); + assertEquals("Quality", anns[0].label); // moved to top + assertEquals("Consensus", anns[1].label); // moved to top + assertEquals("label0", anns[2].label); // the rest unchanged + assertEquals("structure", anns[3].label); + assertEquals("iron", anns[4].label); + assertEquals("label5", anns[5].label); + assertEquals("IRP", anns[6].label); + + /* + * showAutocalcAbove=false, autocalcOnly=true + */ + testee = new AnnotationSorter(al, false, true); + testee.sort(anns, SequenceAnnotationOrder.LABEL_AND_SEQUENCE); + assertEquals("label0", anns[0].label); // unchanged + assertEquals("structure", anns[1].label); + assertEquals("iron", anns[2].label); + assertEquals("label5", anns[3].label); + assertEquals("IRP", anns[4].label); + assertEquals("Quality", anns[5].label); // moved to bottom + assertEquals("Consensus", anns[6].label); // moved to bottom + } } -- 1.7.10.2