From fbc08ff6b8d8d5f72cf36dbb600c891ffa6d8c2b Mon Sep 17 00:00:00 2001 From: "cmzmasek@gmail.com" Date: Thu, 24 Feb 2011 07:50:14 +0000 Subject: [PATCH] Edited wiki page PhyloBioRuby through web user interface. --- wiki/PhyloBioRuby.wiki | 17 ++++++++++++++++- 1 file changed, 16 insertions(+), 1 deletion(-) diff --git a/wiki/PhyloBioRuby.wiki b/wiki/PhyloBioRuby.wiki index e05a191..84ef1e9 100644 --- a/wiki/PhyloBioRuby.wiki +++ b/wiki/PhyloBioRuby.wiki @@ -9,7 +9,22 @@ Tutorial for multiple sequence alignments and phylogenetic methods in BioRuby -- == Reading in a Multiple Sequence Alignment from a File == -== Calculating a Multiple Sequence Alignment = +... to be done + +== Calculating a Multiple Sequence Alignment == + +=== MAFFT === + +' +#!/usr/bin/env ruby +require 'bio' +options = [ '--maxiterate', '1000', '--localpair' ] +mafft = Bio::MAFFT.new('/home/zma/SOFTWARE/mafft-6.847-without-extensions/scripts/mafft', options ) +report = mafft.query_align( seqs) +' + + + Add your content here. Format your content with: * Text in *bold* or _italic_ * Headings, paragraphs, and lists -- 1.7.10.2