From fbed76ebd126ac6152be48a717c4350e3229b5a5 Mon Sep 17 00:00:00 2001
From: tva <tva@10.205.251.175>
Date: Wed, 3 Jul 2019 13:45:22 +0100
Subject: [PATCH] JAL-2629 fix search scores being read in incorrectly

---
 src/jalview/hmmer/JackHMMER.java |    2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/src/jalview/hmmer/JackHMMER.java b/src/jalview/hmmer/JackHMMER.java
index 1731439..16dcebb 100644
--- a/src/jalview/hmmer/JackHMMER.java
+++ b/src/jalview/hmmer/JackHMMER.java
@@ -361,7 +361,7 @@ public class JackHMMER extends HmmerCommand
       annot.setEValue(dEValue);
 
       double dBitScore = Double.parseDouble(bitScore);
-      annot.setEValue(dBitScore);
+      annot.setBitScore(dBitScore);
 
       annot.setSequenceRef(seq);
       seq.addAlignmentAnnotation(annot);
-- 
1.7.10.2