From fd34ac70f21e8d47cc60154519ded224f4da7a66 Mon Sep 17 00:00:00 2001
From: Jim Procter <jprocter@issues.jalview.org>
Date: Thu, 23 Jul 2015 18:52:39 +0100
Subject: [PATCH] =?utf8?q?JAL-1759=20formatting=E2=80=A8?=
MIME-Version: 1.0
Content-Type: text/plain; charset=utf8
Content-Transfer-Encoding: 8bit

---
 src/jalview/gui/Jalview2XML.java |   78 +++++++++++++++++++-------------------
 1 file changed, 39 insertions(+), 39 deletions(-)

diff --git a/src/jalview/gui/Jalview2XML.java b/src/jalview/gui/Jalview2XML.java
index 5366820..107d9e3 100644
--- a/src/jalview/gui/Jalview2XML.java
+++ b/src/jalview/gui/Jalview2XML.java
@@ -3832,53 +3832,53 @@ public class Jalview2XML
       }
     }
 
-      final String[] pdbf = pdbfilenames.toArray(new String[pdbfilenames
-              .size()]);
-      final String[] id = pdbids.toArray(new String[pdbids.size()]);
-      final SequenceI[][] sq = seqmaps
-              .toArray(new SequenceI[seqmaps.size()][]);
-      final String fileloc = newFileLoc.toString();
-      final String sviewid = viewerData.getKey();
-      final AlignFrame alf = af;
-      final Rectangle rect = new Rectangle(svattrib.getX(),
-              svattrib.getY(), svattrib.getWidth(), svattrib.getHeight());
-      try
+    final String[] pdbf = pdbfilenames.toArray(new String[pdbfilenames
+            .size()]);
+    final String[] id = pdbids.toArray(new String[pdbids.size()]);
+    final SequenceI[][] sq = seqmaps
+            .toArray(new SequenceI[seqmaps.size()][]);
+    final String fileloc = newFileLoc.toString();
+    final String sviewid = viewerData.getKey();
+    final AlignFrame alf = af;
+    final Rectangle rect = new Rectangle(svattrib.getX(), svattrib.getY(),
+            svattrib.getWidth(), svattrib.getHeight());
+    try
+    {
+      javax.swing.SwingUtilities.invokeAndWait(new Runnable()
       {
-        javax.swing.SwingUtilities.invokeAndWait(new Runnable()
+        @Override
+        public void run()
         {
-          @Override
-          public void run()
+          JalviewStructureDisplayI sview = null;
+          try
           {
-            JalviewStructureDisplayI sview = null;
-            try
-            {
-              sview = new StructureViewer(alf.alignPanel
-                      .getStructureSelectionManager()).createView(
-                      StructureViewer.ViewerType.JMOL, pdbf, id, sq,
-                      alf.alignPanel, svattrib, fileloc, rect, sviewid);
-              addNewStructureViewer(sview);
-            } catch (OutOfMemoryError ex)
+            sview = new StructureViewer(alf.alignPanel
+                    .getStructureSelectionManager()).createView(
+                    StructureViewer.ViewerType.JMOL, pdbf, id, sq,
+                    alf.alignPanel, svattrib, fileloc, rect, sviewid);
+            addNewStructureViewer(sview);
+          } catch (OutOfMemoryError ex)
+          {
+            new OOMWarning("restoring structure view for PDB id " + id,
+                    (OutOfMemoryError) ex.getCause());
+            if (sview != null && sview.isVisible())
             {
-              new OOMWarning("restoring structure view for PDB id " + id,
-                      (OutOfMemoryError) ex.getCause());
-              if (sview != null && sview.isVisible())
-              {
-                sview.closeViewer(false);
-                sview.setVisible(false);
-                sview.dispose();
-              }
+              sview.closeViewer(false);
+              sview.setVisible(false);
+              sview.dispose();
             }
           }
-        });
-      } catch (InvocationTargetException ex)
-      {
-        warn("Unexpected error when opening Jmol view.", ex);
+        }
+      });
+    } catch (InvocationTargetException ex)
+    {
+      warn("Unexpected error when opening Jmol view.", ex);
 
-      } catch (InterruptedException e)
-      {
-        // e.printStackTrace();
-      }
+    } catch (InterruptedException e)
+    {
+      // e.printStackTrace();
     }
+
   }
 
   /**
-- 
1.7.10.2