From fe3f72a41de913cc633f1f6449d3a6433f301b10 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Mon, 10 Apr 2006 14:14:58 +0000
Subject: [PATCH] fix links to complex html (that don't display) by quoting
 them verbatim.

---
 help/html/features/seqfeatures.html |   23 +++++++++++++----------
 1 file changed, 13 insertions(+), 10 deletions(-)

diff --git a/help/html/features/seqfeatures.html b/help/html/features/seqfeatures.html
index 2217c29..d7ff008 100755
--- a/help/html/features/seqfeatures.html
+++ b/help/html/features/seqfeatures.html
@@ -22,8 +22,20 @@ sequence appears in different alignments when a new alignment is
 generated by submitting an existing set of sequences to one of the
 alignment or prediction web services, and when sequences are copied
 and pasted into other alignment windows.</p>
+<p><strong>View&#8594;Show Sequence Features</strong></p>
+<p>Toggle the display of sequence features in this alignment. If
+feature retrieval has not already been carried out, then Jalview will
+automatically try to fetch sequence features (as described below).</p>
+<p><strong>View&#8594;Sequence Feature Settings...</strong>
+<p>Once sequence features have been loaded, their display can be fully
+  controlled using the alignment window's <a
+  href="featuresettings.html">Sequence Feature Settings</a> dialog
+  box. Feature colour schemes and display parameters are unique to a
+  particular alignment, so it is possible to colour the same sequence
+  features differently in different alignment views.</p>
 <p><strong>View&#8594;Fetch Sequence Features</strong></p>
-<p>When this option is selected, sequence features extracted from the <a href="http://www.ebi.uniprot.org/">Uniprot</a> 
+<p>When this option is selected, sequence features extracted from the
+  <a href="http://www.ebi.uniprot.org/index.html">Uniprot (http://www.ebi.unprot.org/index.html)</a> 
   record for each sequence are displayed on the alignment.</p>
 <p>Jalview will attempt to retrieve sequence features from Uniprot files using 
   the EBI dbFetch web service using the given sequence names (or
@@ -32,15 +44,6 @@ and pasted into other alignment windows.</p>
 <p>More information about the feature is given in a tooltip, which is viewed by 
   moving the mouse pointer over a sequence feature. The description associated 
   with the feature will then be displayed in a small label near the pointer.</p>
-<p><strong>View&#8594;Show Sequence Features</strong></p>
-<p>Toggle the display of sequence features in this alignment.</p>
-<p><strong>View&#8594;Feature Settings...</strong>
-<p>Once sequence features have been loaded, their display can be fully
-  controlled using the alignment window's <a
-  href="featuresettings.html">Sequence Feature Settings</a> dialog
-  box. Feature colour schemes and display parameters are unique to a
-  particular alignment, so it is possible to colour the same sequence
-  features differently in different alignment views.</p>
 <p><strong>The Sequence Identification Process</strong>
 
   </p>
-- 
1.7.10.2