From ff966589beea8e5a0571ce881ffe0d2b4e6da1c2 Mon Sep 17 00:00:00 2001
From: jprocter <Jim Procter>
Date: Thu, 31 Jul 2008 10:15:50 +0000
Subject: [PATCH] refactored method for registering instance of a dbSource
 with the SequenceFetcher from the factory method for
 creating a dbSource instance

---
 src/jalview/ws/seqfetcher/ASequenceFetcher.java |   27 +++++++++++++++--------
 1 file changed, 18 insertions(+), 9 deletions(-)

diff --git a/src/jalview/ws/seqfetcher/ASequenceFetcher.java b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
index 9c2bfd4..c4f7e9a 100644
--- a/src/jalview/ws/seqfetcher/ASequenceFetcher.java
+++ b/src/jalview/ws/seqfetcher/ASequenceFetcher.java
@@ -215,6 +215,7 @@ public class ASequenceFetcher
   protected void addDBRefSourceImpl(Class dbSourceProxy)
           throws java.lang.IllegalArgumentException
   {
+    DbSourceProxy proxy = null; 
     try
     {
       Object proxyObj = dbSourceProxy.getConstructor(
@@ -225,15 +226,7 @@ public class ASequenceFetcher
                 dbSourceProxy.toString()
                         + " does not implement the jalview.ws.seqfetcher.DbSourceProxy");
       }
-      DbSourceProxy proxy = (DbSourceProxy) proxyObj; 
-      if (proxy != null)
-      {
-        if (FETCHABLEDBS == null)
-        {
-          FETCHABLEDBS = new Hashtable();
-        }
-        FETCHABLEDBS.put(proxy.getDbSource(), proxy);
-      }
+      proxy = (DbSourceProxy) proxyObj;
     } 
     catch (IllegalArgumentException e)
     {
@@ -244,6 +237,22 @@ public class ASequenceFetcher
       // Serious problems if this happens.
       throw new Error("DBRefSource Implementation Exception", e);
     }
+    addDbRefSourceImpl(proxy);
+  }
+  /**
+   * add the properly initialised DbSourceProxy object 'proxy' to the list of sequence fetchers
+   * @param proxy
+   */
+  protected void addDbRefSourceImpl(DbSourceProxy proxy)
+  {
+    if (proxy != null)
+    {
+      if (FETCHABLEDBS == null)
+      {
+        FETCHABLEDBS = new Hashtable();
+      }
+      FETCHABLEDBS.put(proxy.getDbSource(), proxy);
+    }
   }
 
 }
\ No newline at end of file
-- 
1.7.10.2