From 4bd3d60110787a65e53b5c1b9d4f10ddb7025090 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 20 Oct 2020 17:23:30 +0100 Subject: [PATCH] JAL-3765 fix test --- test/jalview/analysis/FinderTest.java | 23 +++++++++++++---------- 1 file changed, 13 insertions(+), 10 deletions(-) diff --git a/test/jalview/analysis/FinderTest.java b/test/jalview/analysis/FinderTest.java index 764c56f..1f45f70 100644 --- a/test/jalview/analysis/FinderTest.java +++ b/test/jalview/analysis/FinderTest.java @@ -82,16 +82,6 @@ public class FinderTest DataSourceType.PASTE); av = af.getViewport(); al = av.getAlignment(); - - // JAL-3765 bug test data - String longSeqData = - ">O80429_MAIZE/2-140 Ferredoxin\n" + - "AAT---------ALSMSILR---APPPCFSSPLRLRV--AVAKPLA-APMRRQLLRAQATYNVKLITPEGEV\n" + - "ELQVPDDVYILDFAEEEGIDLPFSCRAGSCSSCAGKVVSGSVDQSDQSFLNDNQVADGWVLTCAAYPTSDVV\n" + - "IETHKEDDLL--\n" ; - af_oneseq=new FileLoader().LoadFileWaitTillLoaded(longSeqData, DataSourceType.PASTE); - av_oneseq = af_oneseq.getViewport(); - al_oneseq = av_oneseq.getAlignment(); } @AfterMethod(alwaysRun = true) @@ -133,6 +123,19 @@ public class FinderTest assertEquals(matches.get(1).getEnd(), 6); } + @Test(groups = "Functional") + public void testFind_findAll() + { + /* + * simple JAL-3765 test + * single symbol should find *all* matching symbols + */ + Finder f = new Finder(av); + f.findAll("M", false,false,false); + SearchResultsI sr = f.getSearchResults(); + assertEquals(sr.getCount(),5); + + } /** * Test for (undocumented) find residue by position */ -- 1.7.10.2