From 631b4913d708d2ccc3c1ad6b1650f507e7008601 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Wed, 30 Mar 2022 14:40:11 +0100 Subject: [PATCH] JAL-3982 todo notes --- src/jalview/rest/HighlightGenomicRangeEndpoint.java | 6 ++++++ 1 file changed, 6 insertions(+) diff --git a/src/jalview/rest/HighlightGenomicRangeEndpoint.java b/src/jalview/rest/HighlightGenomicRangeEndpoint.java index b0aa435..26b9997 100644 --- a/src/jalview/rest/HighlightGenomicRangeEndpoint.java +++ b/src/jalview/rest/HighlightGenomicRangeEndpoint.java @@ -98,6 +98,12 @@ public class HighlightGenomicRangeEndpoint extends AbstractEndpoint } } } + // Currently: + // seq is an ENSG.. sequence - so 'mouseOverVamsasSequence' will highlight that position, but not the mapped position(s) in transcripts/products. + // a couple of options: + // 1. broaden search above to record mapped regions in transcripts and either highlight directly, or add a 'highlight all regions' call to structure selection manager + // 2. create a new structureselectionmanager call highlightLocusPosition(..) + // highlight for (SequenceI seq : ssmMap.keySet()) { -- 1.7.10.2