From 79501a7433d7fd26f958b8574e2147e011433224 Mon Sep 17 00:00:00 2001 From: Jim Procter Date: Tue, 23 May 2017 20:39:17 +0100 Subject: [PATCH 1/1] JAL-2549 RNAAliFold result to annotation file roundtrip test fails test due to JAL-2550 - Upper/lower case alphabet recognised as WUSS RNA annotation --- test/jalview/ws/jabaws/RNAStructExportImport.java | 4 +++- 1 file changed, 3 insertions(+), 1 deletion(-) diff --git a/test/jalview/ws/jabaws/RNAStructExportImport.java b/test/jalview/ws/jabaws/RNAStructExportImport.java index 5ea97ff..089c29f 100644 --- a/test/jalview/ws/jabaws/RNAStructExportImport.java +++ b/test/jalview/ws/jabaws/RNAStructExportImport.java @@ -202,7 +202,9 @@ public class RNAStructExportImport } while (af.getViewport().getCalcManager().isWorking()); AlignmentI orig_alig = af.getViewport().getAlignment(); - + // JBPNote: this assert fails (2.10.2) because the 'Reference Positions' + // annotation is mistakenly recognised as an RNA annotation row when read in + // as an annotation file. verifyAnnotationFileIO("Testing RNAalifold Annotation IO", orig_alig); } -- 1.7.10.2