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2017-10-25	Jim Procter	JAL-2617 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2617mappedStopCodon' into develop	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2636 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2667 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2667mouseWheelWrapped' into develop	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2727 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2727 add not to Test failed message recommending...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2727closeAllFreeMemory' into...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2732 JAL-1900 JAL-1625 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bugs/JAL-2779_osx_dialogsequencingbroke...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2779 remove empty block and if statement	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2790 JAL-2392 release notes	commit \| commitdiff \| tree
2017-10-25	Jim Procter	Merge branch 'bug/JAL-2392_deadlockonpdbdisplay' into...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2790 provide a cancel button for JABAWS and AACon...	commit \| commitdiff \| tree
2017-10-25	Jim Procter	JAL-2392 auto boxing rather than explicit Long as key	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2495 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2643 JAL-2524 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2524 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2733 JAL-2658 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-1980 release notes (retrodoc for 2.10.0)	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2687 JAL-2608 release notes	commit \| commitdiff \| tree
2017-10-24	Jim Procter	Merge branch 'features/JAL-2608closeOverview' into...	commit \| commitdiff \| tree
2017-10-24	Jim Procter	JAL-2542 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2609 remove unused AlignPanel.fastPaint flag and...	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2609attemptedmerge' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2768 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2739 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2739' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2682 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2682parseId' into develop	commit \| commitdiff \| tree
2017-10-23	Jim Procter	JAL-2253 release notes	commit \| commitdiff \| tree
2017-10-23	Jim Procter	Merge branch 'bug/JAL-2253' into develop	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-2779 keep a reference to original Aqua manager...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-2779 remove OSX platform specific import (not needed...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	Merge branch 'patch/JAL-547_pid_groovyscript' into...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 fix NPE when no selection available	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 only generate matrix for current selection...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 PID script in release notes	commit \| commitdiff \| tree
2017-10-20	Jim Procter	Merge branch 'patch/JAL-547_pid_groovyscript' into...	commit \| commitdiff \| tree
2017-10-20	Jim Procter	JAL-547 updated the PID script for 2.10.x series score...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 switch order for updating the current alignment...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 remove dead code	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 hook in our own AquaInternalFrameManager when...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 JAL-1551 source formatting	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 patch so closing most recent frame doesn’t...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2779 original version of AquaInternalFrame Manager	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2782 remark about possible exception due to unsafe...	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2777 JAL-2773 release notes	commit \| commitdiff \| tree
2017-10-18	Jim Procter	Merge branch 'bugs/JAL-2777_whitespaceChain' into develop	commit \| commitdiff \| tree
2017-10-18	Jim Procter	JAL-2777 remove duplicate code outside conditional...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 release notes	commit \| commitdiff \| tree
2017-10-17	Jim Procter	Merge branch 'features/JAL-2773_dontalwaysrecolourstructureo...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2773 renamed flags for clarity	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 patch for whitespace chain	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 test for the whitespace chain	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2481 patch to fix findFeatureColour for end-of...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2481 test correct behaviour of findFeatureColour...	commit \| commitdiff \| tree
2017-10-17	Jim Procter	JAL-2777 noticed exception raised on construction of...	commit \| commitdiff \| tree
2017-10-12	Jim Procter	JAL-2773 add new flag to paintAlignment(updateOverview...	commit \| commitdiff \| tree
2017-10-11	Jim Procter	JAL-2757 release notes	commit \| commitdiff \| tree
2017-10-10	Jim Procter	JAL-2392 wrap public progress bar methods as InvokeLater...	commit \| commitdiff \| tree
2017-10-10	Jim Procter	JAL-2392 formatting	commit \| commitdiff \| tree
2017-10-10	Jim Procter	Merge branch 'codereviews/JAL-1990_IProgressIndicator_jalvie...	commit \| commitdiff \| tree
2017-10-10	Jim Procter	JAL-2523 release notes	commit \| commitdiff \| tree
2017-10-10	Jim Procter	Merge branch 'features/JAL-2523httpRetries' into develop	commit \| commitdiff \| tree
2017-10-09	Jim Procter	Merge branch 'patch/JAL-2446_mergeconflictmissed' into...	commit \| commitdiff \| tree
2017-10-09	Jim Procter	JAL-2446 remove duplicate code from pulled up method.	commit \| commitdiff \| tree
2017-10-06	Jim Procter	Merge branch 'patch/JAL-2116_java9_antjnlpfix' into...	commit \| commitdiff \| tree
2017-10-06	Jim Procter	JAL-2116 fix jnlp file post-processing so java 9 module...	commit \| commitdiff \| tree
2017-10-05	Jim Procter	JAL-2757 reset textbox after a non HTTP 200 response	commit \| commitdiff \| tree
2017-10-03	Jim Procter	Merge branch 'releases/Release_2_10_2b1_Branch' into...	commit \| commitdiff \| tree
2017-10-01	Jim Procter	Merge branch 'documentation/JAL-2751patch2102b2' into...	commit \| commitdiff \| tree
2017-10-01	Jim Procter	JAL-2751 what's new for 2.10.2b2 patch	commit \| commitdiff \| tree
2017-10-01	Jim Procter	JAL-2751 patch release notes	commit \| commitdiff \| tree
2017-09-30	Jim Procter	JAL-2751 bump version and new releases entry	commit \| commitdiff \| tree
2017-09-29	Jim Procter	Merge branch 'feature/JAL-2745ebiHttps' into develop	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2748 JAL-2745 remove uniprot from EBI fetch client...	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 patch tests for https	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2748 formatting	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 JAL-2748 direct download of XML from uniprot.org	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2748 JAL-2745 remove uniprot from EBI fetch client...	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 patch tests for https	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2748 formatting	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 JAL-2748 direct download of XML from uniprot.org	commit \| commitdiff \| tree
2017-09-29	Jim Procter	Merge branch 'feature/JAL-2745ebiHttps' into develop	commit \| commitdiff \| tree
2017-09-29	Jim Procter	Revert "JAL-2745 update SIFTS FTP URL to HTTPS"	commit \| commitdiff \| tree
2017-09-29	Jim Procter	Revert "JAL-2745 update SIFTS FTP URL to HTTPS"	commit \| commitdiff \| tree
2017-09-29	Jim Procter	Merge branch 'feature/JAL-2745ebiHttps' into develop	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 update default EBI-eye search URL to HTTPS	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 update SIFTS FTP URL to HTTPS	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 update default EBI-eye search URL to HTTPS	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 update SIFTS FTP URL to HTTPS	commit \| commitdiff \| tree
2017-09-29	Jim Procter	Merge branch 'feature/JAL-2745ebiHttps' into develop	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 stderr rather than stdout for unexpected HTTP...	commit \| commitdiff \| tree
2017-09-29	Jim Procter	JAL-2745 stderr rather than stdout for unexpected HTTP...	commit \| commitdiff \| tree
2017-09-15	Jim Procter	Merge branch 'documentation/JAL-2698_release2103' into...	commit \| commitdiff \| tree
2017-09-15	Jim Procter	JAL-2698 new releases.html entry, whatsNew.html and...	commit \| commitdiff \| tree
2017-09-15	Jim Procter	Merge branch 'bug/JAL-2728splitFrameDivision' into...	commit \| commitdiff \| tree
2017-09-15	Jim Procter	JAL-1625 ensure we don’t regress on JAL-20 - we always...	commit \| commitdiff \| tree
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