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JAL-1286 don't print an exception if a non-gzip stream is attempted to be opened...
2014-11-12
Jim Procter
JAL-1541 added Jsoup to the InstallAnywhere config
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2014-11-12
Jim Procter
JAL-1541 added Jsoup to the InstallAnywhere config
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2014-11-06
Jim Procter
Merge branch 'features/JAL-1152annotationSorting' into...
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2014-11-06
Jim Procter
Merge branch 'features/JAL-1541_BioJsMSAViewer-export...
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2014-11-04
Jim Procter
JAL-1213 normalise sequence extracted from Jmol in...
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2014-11-04
Jim Procter
JAL-1213 test to ensure JMol extracted sequences are...
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2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotationSorting
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2014-11-03
Jim Procter
Merge branch 'bug/JAL-1250_redundance-removal' into...
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2014-11-03
Jim Procter
Merge branch 'develop' into features/JAL-1152annotationSorting
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2014-11-03
Jim Procter
Merge branch 'features/ssFromPDBEntry' into develop
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2014-11-03
Jim Procter
JAL-795 JAL-674 tweaked logic to avoid black annotation...
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2014-11-03
Jim Procter
fix for JAL-1579 create threshold object for annotation...
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2014-11-03
Jim Procter
JAL-1578 test property accessors/copy constructor
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2014-11-03
Jim Procter
JAL-1578 JAL-674 store/restore alignment annotation...
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2014-11-03
Jim Procter
JAL-1578 formatting and imports
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2014-11-03
Jim Procter
JAL-674 peptide structure input so test is not dependent...
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2014-11-03
Jim Procter
JAL-1551 formatting
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2014-11-03
Jim Procter
JAL-674 JAL-961 JAL-1578 accessors and copy constructor...
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2014-11-03
Jim Procter
javadoc
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2014-10-31
Jim Procter
JAL-674 JAL-961 pass row reference to handler to check...
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2014-10-31
Jim Procter
JAL-674 JAL-961 properties to stash additional information...
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2014-10-30
Jim Procter
Merge branch 'develop' into features/ssFromPDBEntry
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2014-10-30
Jim Procter
JAL-674 hang on to sequences created by secondary parsiing...
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2014-10-30
Jim Procter
JAL-674 count number of annotation transferred in test
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2014-10-30
Jim Procter
JAL-674 propagate annotation onto mapped sequence and...
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2014-10-30
Jim Procter
JAL-674 register PDB IDs when ever they are resolved...
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2014-10-30
Jim Procter
JAL-674 use PDB ID<>File registry to look up correct...
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2014-10-30
Jim Procter
JAL-674 return original and replacement sequences and...
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2014-10-30
Jim Procter
JAL-674 helpful javadoc for remap method
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2014-10-30
Jim Procter
JAL-674 flag and proxy method to distinguish setMapping...
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2014-10-30
Jim Procter
JAL-674 map on StructureSelectionManager to record...
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2014-10-30
Jim Procter
patch for JAL-795 - use base secondary structure colour...
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2014-10-30
Jim Procter
JAL-674 patch test to verify presence of annotation...
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2014-10-30
Jim Procter
JAL-1551 format and tidy
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2014-10-29
Jim Procter
JAL-1264 JAL-674 test to exercise the AlignmentAnnotation...
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2014-10-29
Jim Procter
JAL-1264 JAL-674 method to copy annotation on structure...
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2014-10-29
Jim Procter
JAL-674 JAL-1264 remap method to allow annotation positions...
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2014-10-27
Jim Procter
Merge branch 'develop' into Release_2_8_2_Branch
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2014-10-27
Jim Procter
Merge branch 'Release_2_8_2_Branch' into merge_r282_dev
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2014-06-23
Jim Procter
Merge branch 'JAL-1526' into Release_2_8_2_Branch
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2014-06-23
Jim Procter
JAL-1526 simple function to write a snapshot of the...
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2014-06-13
Jim Procter
Merge branch 'Release_2_8_2_Branch' into JAL-1483_featureBas...
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2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into develop
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2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into Release_2_8_2_Branch
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2014-06-12
Jim Procter
Merge branch 'hotfix/JAL-1524' into Release_2_8_1_Branch
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2014-06-12
Jim Procter
JAL-1524 fix
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2014-06-12
Jim Procter
Merge branch 'feature/JAL-1379' into develop
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2014-06-10
Jim Procter
Merge branch 'feature/JAL-1379' into Release_2_8_2_Branch
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2014-06-10
Jim Procter
JAL-1379 a JPred v3.0.1 client via JABA 2.1
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2014-06-10
Jim Procter
JAL-1379 allow services with an MSA interface to create...
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2014-06-10
Jim Procter
tidy source
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2014-06-10
Jim Procter
JAL-1379 allow JABA2 tests to run on local or default...
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2014-06-10
Jim Procter
JAL-1379 refactor Jws2 service client so dynamic services...
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2014-06-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into develop
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2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
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2014-06-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into develop
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2014-06-06
Jim Procter
JAL-1520 fix unicode translation errors.
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2014-06-06
Jim Procter
Merge branch 'Release_2_8_2_Branch' into develop
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2014-06-06
Jim Procter
JAL-1519 make the splash screen larger/more readable
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2014-06-06
Jim Procter
JAL-1519 - tidy build properties management code
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2014-06-06
Jim Procter
JAL-1519 fix author update issue (doh)
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2014-06-06
Jim Procter
JAL-1140 Add Anne Menard to author list
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2014-06-06
Jim Procter
JAL-1517 copyright and formatting
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2014-06-06
Jim Procter
JAL-1518 drop Jalopy from utils directory
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2014-06-06
Jim Procter
JAL-1517 copyright and formatting
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2014-06-06
Jim Procter
JAL-1517 source formatting
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2014-06-06
Jim Procter
JAL-1518 drop Jalopy from utils directory
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2014-06-06
Jim Procter
JAL-1517 fix copyright for 2.8.2
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2014-06-05
Jim Procter
JAL-1517 update copyright to version 2.8.2
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2014-06-05
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_2_Branch
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-1503 typo
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2014-06-04
Jim Procter
Merge branch 'develop' into Release_2_8_2_Branch
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-1503 update author list for 2.8.1
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-690 JAL-1503 make file associations optional for...
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2014-06-04
Jim Procter
Merge branch 'develop' of https://source.jalview.org...
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2014-06-04
Jim Procter
JAL-952 fixed unresolved conflict breaking build
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2014-06-04
Jim Procter
Jalview 2.8.2 release branch
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2014-06-04
Jim Procter
JAL-952 fixed unresolved conflict breaking build
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-1503 tweak whatsNew document
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-1503 JAL-690 document .jvp in release notes
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-1514 - add jalview.org and dundee to explore if...
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2014-06-04
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-04
Jim Procter
JAL-1503 tidying docs
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2014-06-04
Jim Procter
JAL-1355 key typo
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2014-06-03
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-03
Jim Procter
JAL-1503 documentation and release notes
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2014-06-03
Jim Procter
JAL-690 jvp rather than jar for save/restore state...
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2014-06-03
Jim Procter
JAL-690 JAL-1503 update file types/extensions in Jalview...
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2014-06-03
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-03
Jim Procter
JAL-1503 update version/branch version for this branch
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2014-06-03
Jim Procter
regress fix on JAL-690 - insert association elements...
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2014-06-03
Jim Procter
Merge branch 'docs/2_8_1_Release' into Release_2_8_1_Branch
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2014-06-03
Jim Procter
JAL-1503 whats new and release history for 2.8.1 (still...
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2014-06-03
Jim Procter
JAL-1503 JAL-1350 rework documentation for 2.8.1
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