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JAL-1427 make sure we are working with dataset sequence when adding cross refs to...
2014-01-28
Jim Procter
JAL-957 unsigned applet demo pages created with jbake
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2014-01-28
Jim Procter
JAL-957 tidier source and ensure permissions is explicitly...
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2014-01-28
Jim Procter
JAL-957 new jbake-generated example pages
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2014-01-28
Jim Procter
JAL-957 instructions on runnning Jbake to regenerate...
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2014-01-28
Jim Procter
JAL-957 standardise formatting for example preamble
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2014-01-28
Jim Procter
JAL-957 standard link to signed/unsigned demo pages...
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2014-01-28
Jim Procter
JAL-957 tidy jbake directory
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2014-01-27
Jim Procter
Merge branch 'JAL-1430_mfa_ext' into Release_2_8_Branch
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2014-01-27
Jim Procter
JAL-1430 mfa added as a known extension for FASTA files
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2014-01-21
jprocter
Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
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2014-01-21
jprocter
JAL-957 JAL-1400 unsigned applet examples
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2014-01-21
jprocter
JAL-957 JAL-1400 use signed/unsigned applet as needed
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2014-01-21
jprocter
JAL-957 JAL-1400 JAL-1407 signed and unsigned jalviewApplet...
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2014-01-21
jprocter
JAL-957 tidy up formatting
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2014-01-21
jprocter
JAL-957 javascript api documentation page
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2014-01-21
jprocter
JAL-957 macro-ise the sidebar generation loop and add...
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2014-01-21
jprocter
JAL-957 only include content body for 'normal' pages...
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2014-01-21
jprocter
JAL-957 fix layout of pages
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2014-01-18
jprocter
formatting
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2014-01-18
jprocter
JAL-1400 numeric version numbers only for minimum jre...
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2014-01-17
jprocter
Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
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2014-01-17
jprocter
JAL-1400 still fixing JmolApplet manifest issue
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2014-01-17
jprocter
Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
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2014-01-17
jprocter
JAL-1400 tweaking to ensure JmolApplet build correctly
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2014-01-17
jprocter
Merge branch 'JAL-1400_sandboxapp' into Release_2_8_Branch
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2014-01-17
jprocter
formatting
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2014-01-17
jprocter
JAL-1400 default JalviewLite build is signed applet...
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2014-01-14
Jim Procter
Merge branch 'WIP_fix_JAL-1423' into Release_2_8_Branch
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2014-01-14
Jim Procter
JAL-1400 specify minimum 1.6 JRE
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2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs_r281' into Release_2_8_1_Branch
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2014-01-13
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into JAL-1422_srs_r281
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2014-01-13
Jim Procter
Merge branch 'JAL-1422_srs' into Release_2_8_Branch
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2014-01-13
Jim Procter
JAL-1422 update any existing configuration to replace...
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2014-01-13
Jim Procter
JAL-1422 change default link to EMBL-EBI Search
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2014-01-13
Jim Procter
JAL-1422 remove SRS and expasy links and replace with...
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2014-01-07
Jim Procter
Merge branch 'fix_JAL-1423' into Release_2_8_1_Branch
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2014-01-07
Jim Procter
Merge branch 'fix_JAL-1423' into Release_2_8_Branch
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2014-01-07
Jim Procter
JAL-1423 - console error reporting and graceful handling...
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into testMerge
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
JAL-1400 update manifest in the JmolApplet jar
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
JAL-1400 disable 'Permissions' in manifest to see if...
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
sandbox permissions
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2013-11-26
Jim Procter
new required parameter for deploying the applet
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2013-11-26
Jim Procter
Merge branch 'JAL-1400_signapplet' into Release_2_8_Branch
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2013-11-26
Jim Procter
JAL-1400 add codebase and caller allowable codebase
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2013-11-25
Jim Procter
JAL-1139 add SHA1WithRSA for applet signjar
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 specified SHA1WithRSA for sig algorithm and...
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2013-11-25
Jim Procter
adivce from http://ant.apache.org/manual/Tasks/signjar...
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 need to explicitly specify SHA1 for java 6...
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 supress dependency warnings from proguard
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_1_Branch
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2013-11-25
Jim Procter
Merge branch 'JAL-1139_proguard' into Release_2_8_Branch
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2013-11-25
Jim Procter
JAL-1139 latest version of proguard needed for Java...
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2013-11-07
Jim Procter
Merge branch 'JAL-1286' into Release_2_8_Branch
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2013-11-07
Jim Procter
Merge branch 'JAL-1286' into Release_2_8_1_Branch
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2013-11-07
Jim Procter
JAL-1286 additional tests to ensure that non-GZ files...
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2013-11-07
Jim Procter
JAL-1286 check if local file ends with .gz and opens...
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2013-11-07
Jim Procter
JAL-1286 test input of gzip stream from local file
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2013-11-05
Jim Procter
JAL-1400 found a fix for the sandbox exception - need...
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2013-11-05
Jim Procter
experiment with reinstating the sandbox permissions
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2013-11-05
Jim Procter
JAL-1400 try putting explicit domain for jalviewLite...
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2013-11-05
Jim Procter
JAL-1400 Always create indices for jar before signing
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2013-11-05
Jim Procter
JAL-1400 sign everything !
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2013-11-05
Jim Procter
JAL-1400 explicit security settings for applet
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2013-11-05
Jim Procter
JAL-1400 explicit security permissions for Desktop
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2013-10-24
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2013-10-24
Jim Procter
Merge branch 'Release_2_8_1_Branch' into Release_2_8_1_Branc...
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2013-10-17
Jim Procter
Merge branch 'JAL-1397' into Release_2_8_1_Branch
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2013-10-17
Jim Procter
fix for JAL-1398 - original colourscheme is enabled...
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2013-10-17
Jim Procter
JAL-1233 TODO concerning the way we propagate annotation...
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2013-10-17
Jim Procter
JAL-1397 make sure annotation colourscheme is up to...
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2013-10-17
Jim Procter
JAL-1397 store colour by sequence and originalColour...
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2013-10-17
Jim Procter
JAL-1397 make sure ColourschemeI instances are up to...
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2013-10-17
Jim Procter
JAL-1397 propagate any consensus/conservation colourscheme...
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2013-10-17
Jim Procter
JAL-1397 getters for originalColours flag
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2013-10-16
Jim Procter
Merge branch 'JAL-1395' into Release_2_8_1_Branch
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2013-10-16
Jim Procter
JAL-1395 do not calculate non-gap consensus when no...
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2013-10-11
Jim Procter
Merge branch 'JAL-1292_regression' into Release_2_8_1_Branch
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2013-10-11
Jim Procter
JAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11
Jim Procter
Merge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11
Jim Procter
JAL-1164 regression on JAL-1292 use bitset to mark...
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2013-10-11
Jim Procter
Merge branch 'JAL-1164_disorderforselection' into Release_2_...
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2013-10-11
Jim Procter
JAL-1164 scope bySequence analysis methods to start...
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2013-10-11
Jim Procter
JAL-1114 javadoc
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2013-10-11
Jim Procter
JAL-1114 promote start/end attributes to gettable fields...
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2013-10-11
Jim Procter
JAL-1114 API javadoc
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2013-10-11
Jim Procter
JAL-1164 only predict on currently selected sequences...
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2013-10-11
Jim Procter
JAL-1385 expose core view model methods in interface
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2013-10-11
Jim Procter
Merge branch 'Release_2_8_1_Branch_i18n' into Release_2_8_1_...
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2013-10-11
Jim Procter
JAL-1354 watch for exceptions when initialising (Security...
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2013-10-11
Jim Procter
JAL-1354 ensure resource bundles are copied into JalviewAppl...
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