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2013-09-20	Sasha Sherstnev	Refactoring: rename duplicated Util classes	commit \| commitdiff \| tree
2013-09-20	Sasha Sherstnev	add lost exception	commit \| commitdiff \| tree
2013-09-20	Sasha Sherstnev	Fix problems with tests	commit \| commitdiff \| tree
2013-09-19	Sasha Sherstnev	JWS-17 re-design behaviour of Option.toString	commit \| commitdiff \| tree
2013-09-19	Sasha Sherstnev	Re-generate WS artefacts: option.furtherDetails is...	commit \| commitdiff \| tree
2013-09-19	Sasha Sherstnev	JWS-17: fix problem with undefined URL for the furtherDetail...	commit \| commitdiff \| tree
2013-09-17	Sasha Sherstnev	Add reference on Jronn	commit \| commitdiff \| tree
2013-09-17	Sasha Sherstnev	Final fixing of Jpred problem with casting	commit \| commitdiff \| tree
2013-09-17	Sasha Sherstnev	Fix probem with metadata	commit \| commitdiff \| tree
2013-09-17	Sasha Sherstnev	Remove unused imports	commit \| commitdiff \| tree
2013-09-17	Sasha Sherstnev	Clean up logging system	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	New Linux binaries for ViennaRNA	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Fix bug with fail WS tests	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Add info on new programs	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Change JABAWS version at the website	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Set right path to UNIREF at ningal	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Re-design the ServiceStatus JSP page	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Define proper test for JpredWS	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Set right permissions for Jpred binaries	commit \| commitdiff \| tree
2013-09-16	Sasha Sherstnev	Made the binary executable at ningal	commit \| commitdiff \| tree
2013-09-13	Sasha Sherstnev	New set of presets for Jpred	commit \| commitdiff \| tree
2013-09-13	Sasha Sherstnev	New Jpred parameters and new set of Jpred presets	commit \| commitdiff \| tree
2013-09-13	Sasha Sherstnev	Fix problem with wrong casting Alignment -> JpredAlignment	commit \| commitdiff \| tree
2013-09-13	Sasha Sherstnev	Add SS prediction for multiple aligment into jpred...	commit \| commitdiff \| tree
2013-09-12	Sasha Sherstnev	Remove un-necessary Axis servlets	commit \| commitdiff \| tree
2013-09-11	Sasha Sherstnev	More commands...	commit \| commitdiff \| tree
2013-09-11	Sasha Sherstnev	Fix problem with the JpredWS service. Now Jws2Client...	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	Log file for preparing of new version of wsdl and xsd...	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	Improved Bld file	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	New version of wsdl and xsd files for all services	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	Re-formatting the file	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	File with main building commands	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	Add "safe type casting" warnings	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	Fix problem with unknown services ("forward" compatibility)	commit \| commitdiff \| tree
2013-09-10	Sasha Sherstnev	Add "safe type cast" warnings	commit \| commitdiff \| tree
2013-09-09	Sasha Sherstnev	Add lost description of RNAalifold from ViennaRNA	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Merge branch 'JABAWS_Release_2_5' into develop	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Merge branch 'JABAWS_Release_2_5' of https://source...	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Regenerate wsdl-s	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Switch to olde namespace	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Different code style	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Switch JpredWS from SequenceAnnotation to MsaWS	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Fix problem with path to the UNIREF database	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Change project name	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Fix problem with test data for RNAalifold	commit \| commitdiff \| tree
2013-09-06	Sasha Sherstnev	Replace logo files	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Change version: 2.0.1 -> 2.5	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Fix logging problem	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Add missing binaty and statis library	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Add missing doc files	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Replace Progs/RNAalifold with x64 binary and add all...	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Roll back JpredWS JABAWS namespace: from V3 to V2....	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Fix a bug with wrong namespace	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Use "right" namespace, i.e. the name from JABAService	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Change JAXWS java code and wsdl for changed methods...	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Other necessary changes	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	New version of the JABAWS client	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Add new method	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Add new V3 namespace	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Add method for reporting JABAWS namespace	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	report both operating and non-operating services	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Changes which allow JpredWS test	commit \| commitdiff \| tree
2013-09-05	Sasha Sherstnev	Improved help message	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Merge branch 'JABAWS_Release_2_5' of https://source...	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	improve instruction for new web services	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Fix problem with unknown global constants	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Re-generated wsdl for old web services	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	JpredWS code and codes which provide support for JpredWS	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Regenerated classes. No significant changes	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Prepare JABAWS for generation of wsdl for Jpred	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Add untracked dir	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Add a file with the runnig command and environment...	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Improve coding style	commit \| commitdiff \| tree
2013-08-09	Sasha Sherstnev	Change header	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Add untracked dir	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Add a file with the runnig command and environment...	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Improve coding style	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	change header	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Change header	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	1st working Jpred tester	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Check and correct several runner testers	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Remove unused global varibles	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Add test of parser of Jpred output	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	uncomment limit files in order to make some tests successful	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Add results of tests of Jpred	commit \| commitdiff \| tree
2013-08-08	Sasha Sherstnev	Add Jpred result files	commit \| commitdiff \| tree
2013-08-07	Sasha Sherstnev	Necessary modifications in JABAWS for Jpred	commit \| commitdiff \| tree
2013-08-07	Sasha Sherstnev	Describe new parameters of Jpred	commit \| commitdiff \| tree
2013-08-07	Sasha Sherstnev	Modify Jpred for JABAWS	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Add Java wrapper class for Jpred	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Re-format configuration files	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	add results of one Jpred test	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Add converion Jpred output from align/jnet to fasta	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Change JABAWS version: 2.0.1 -> 2.5	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Add new artwork	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Impove coding style	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	Re-format the config files in order to get more readable...	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	JWS-67 configuration and manual file for jpred 3.0.1	commit \| commitdiff \| tree
2013-08-02	Sasha Sherstnev	JWS-67 Update internal man for jpred.pl	commit \| commitdiff \| tree
2013-08-01	Sasha Sherstnev	JWS-67 Add Jpred to configuration files	commit \| commitdiff \| tree
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