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jalview.git
2011-09-14
jprocter
fix for JAL-930
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2011-09-14
jprocter
JAL-766 JAL-733 - new alignment->jmol associations...
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2011-09-12
jprocter
JAL-927 ensure api method calls that affect GUI state...
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2011-09-05
jprocter
note about ensuring callers of loadAlignment(..) save...
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2011-09-05
jprocter
removed old VARNA library
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2011-08-30
jprocter
patch for JAL-731
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2011-08-30
jprocter
patch for JAL-729 - NPE avoided and cut and paste impor...
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2011-08-30
jprocter
JAL-915 - ensured that exceptions are not raised in...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
fix for JAL-917 - ensure all sequence strings are made...
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2011-08-30
jprocter
JAL-715 - conditional to hide the RSBS service editing...
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2011-08-30
jprocter
JAL-715 rsbs service editing
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2011-08-30
jprocter
JAL-715 JalviewDialog for RSBS service editing pane
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2011-08-30
jprocter
JAL-715 store/reset .jalview_properties setting for...
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2011-08-30
jprocter
JAL-715 serialise and deserialise multiple rest client...
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2011-08-30
jprocter
JAL-715 - notify user of parsing problems for results...
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2011-08-30
jprocter
retrieve URL for datasource of packed set
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2011-08-30
jprocter
ensure parsing errors and 'lack of data' errors are...
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2011-08-30
jprocter
JAL-715 need to URLencode constant values when serializ...
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2011-08-29
jprocter
JAL-715 - grammar for warning message.
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2011-08-29
jprocter
added notes on third party library licencing and update...
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2011-08-29
jprocter
JAL-919, JAL-715 - prototype service editing dialog...
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2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
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2011-08-29
jprocter
refactored popup dialog boilerplate code to own class
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2011-08-29
jprocter
JAL-633 simple concrete parameter and option objects...
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2011-08-29
jprocter
JAL-633, JAL-591 - refactored ArgumentI.getValue from...
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2011-08-28
janengelhardt
Including of VARNAv-3.9;
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2011-08-25
jprocter
constructor only needs GUI container interface
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2011-08-25
jprocter
JAL-591 - refactored web service parameter dialog to...
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2011-08-25
jprocter
JAL-715 - better validation logic
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2011-08-25
jprocter
debug dialog
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2011-08-25
jprocter
JAL-715 - prevent empty elements being generated
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2011-08-24
jprocter
JAL-715 dialog for interactively editing a new or exist...
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2011-08-24
jprocter
new Swing and SWT capable form layout manager - miglayout
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2011-08-24
jprocter
JAL-715 bugfixes and refactor of parsing code for use...
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2011-08-24
jprocter
refactor labelled button creator to JvSwingUtils
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2011-08-23
jprocter
JAL-715 - simple tests and functions for IO of service...
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2011-08-23
jprocter
JAL-715 - allow rest service attributes to be exported...
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2011-08-21
janengelhardt
JAL-913; Extending documentation; VARNA help;
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2011-08-19
janengelhardt
JAL-913; Documentation of RNA Structure Conservation
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2011-08-19
jprocter
JAL-908 JAL-912 JAL-516 documented annotation HTML...
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2011-08-19
jprocter
JAL-908,JAL-701 - patch applet to strip HTML tags from...
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2011-08-19
jprocter
JAL-908 JAL-701 refactored HTML escape/unescape code...
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2011-08-18
jprocter
testdata for JAL-701 and JAL-908
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2011-08-18
jprocter
remove debug message
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2011-08-18
jprocter
fix for JAL-701 - ensure '<' appears in tooltip in...
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2011-08-18
jprocter
minor efficiency refactor
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2011-08-18
jprocter
JAL-907 testdata for JAL-701
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2011-08-18
jprocter
JAL-907 - test data directory readme
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2011-08-17
jprocter
JAL-853 use service action attribute to index services...
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2011-08-17
jprocter
remove any trailing '/' from the URL before validation...
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2011-08-17
jprocter
avoid NPE race condition when several threads waiting...
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2011-08-17
jprocter
fix for JAL-888
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2011-08-17
jprocter
fix for JAL-888
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2011-08-17
jprocter
JAL-898 - ensure we only remove a clargs progress bar...
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2011-08-17
jprocter
JAL-813 fix - check whether conservation is applied...
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2011-08-17
jprocter
JAL-867 - rejigged layout to a single splitpane wide...
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2011-08-16
janengelhardt
JAL-842; Text element containing the structure is not...
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2011-08-15
janengelhardt
JAL-891; Tooltips for Structure logos implemented;
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2011-08-15
janengelhardt
JAL-878; Structures associated to a sequence are availa...
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2011-08-15
jprocter
JAL-750 automaticScrolling is true by default
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2011-08-15
jprocter
JAL-750 - automaticScrolling=true by default. Refactore...
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2011-08-15
jprocter
JAL-747 - warning dialog if Jalview can't resolve filen...
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2011-08-15
jprocter
JAL-904 added scrollToRow and scrollToColumn methods...
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2011-08-15
janengelhardt
JAL-891; Labeling of structure conservation is improved...
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2011-08-15
janengelhardt
JAL-891; Sorting of Structure logo implemented; bug...
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2011-08-11
jprocter
avoid NPE for null annotation element columns JAL-896
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2011-08-11
janengelhardt
JAL-885; hasRNAStructure method was introduced to Align...
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2011-08-10
janengelhardt
JAL-885; Structure conservation row is just added if...
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2011-08-09
janengelhardt
JAL-891; base-pair logos can now be activated for structure
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2011-08-08
janengelhardt
JAL-891; structure logo is adapted to two char's; Missi...
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2011-08-08
janengelhardt
JAL-891; sequence logos are available on structure...
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2011-08-05
jprocter
example script that will submit a muscle jabaws job...
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2011-08-05
jprocter
fetch groovy script from URL (JAL-899) and show progres...
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2011-08-05
jprocter
allow several progress bars on the desktop window ...
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2011-08-04
jprocter
JAL-896 - patch to ensure arrows in different direction...
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2011-08-04
jprocter
JAL-883 - refactored and debugged arrow, stem and helix...
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2011-08-03
jprocter
Merge branch 'master' of https://source.jalview.org...
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2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
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2011-08-03
jprocter
refactored resolvetocodebase code and reused for resour...
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2011-08-03
jprocter
fix NPE when applets stop. seems to make the simple...
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2011-08-03
janengelhardt
JAL-885; Multi-helix bug is solved; One should think...
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2011-08-03
jprocter
refactor schema to group swing window geometry attributes
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2011-07-31
janengelhardt
JAL-885; StructureConservation row is displayed at...
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2011-07-29
janengelhardt
JAL-885; Implementation of StructureFrequency.java...
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2011-07-28
jprocter
refer to local default setting for proxy when connecting to
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2011-07-28
jprocter
added 'since 2.x notes to parameters'. User configurabl...
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2011-07-26
jprocter
example alignment for JAL-862 - removed signal peptides
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2011-07-25
jprocter
use proper encoding for storing colour as user preferen...
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2011-07-25
janengelhardt
some print statements to test things
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2011-07-25
janengelhardt
JAL-882; VARNA crashed when non-standard gaps where...
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2011-07-25
janengelhardt
JAL-878; Additional structures with a 'GR' tag in Stock...
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2011-07-25
janengelhardt
JAL-842; toy example to insert nucleotides in sequences...
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2011-07-25
janengelhardt
JAL-842; Implement transmitting of Jalview Sequence...
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2011-07-25
janengelhardt
JAL-842: some bugfixes;
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2011-07-25
janengelhardt
JAL-842; Added the TextField to edit structure in VARNA
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2011-07-25
janengelhardt
JAL-842; trimming single structures for single sequence...
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2011-07-25
janengelhardt
JAL-842; Give Varna frames name for window organizer...
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2011-07-25
janengelhardt
Varna external frame bug solved
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2011-07-25
janengelhardt
Reorganize the class structure, unfortunately breaks...
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